| 1st | 38 | Yuuji Tachikawa / Hiroaki Ishiura | Lexus RC F (USC10) | Lexus Team Zent Cerumo | 1:25.2950 |
| 2nd | 36 | Daisuke Itou / James Rossiter | Lexus RC F (USC10) | Lexus Team Petronas Tom's | 1:25.3030 |
| 3rd | 46 | Satoshi Motoyama / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:25.3220 |
| 4th | 6 | Kazuya Oshima / Yuuji Kunimoto | Lexus RC F (USC10) | Lexus Team Le Mans Eneos | 1:25.8420 |
| 5th | 64 | Daisuke Nakajima / Bertrand Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:25.8730 |
| 6th | 37 | Andrea Caldarelli / Ryo Hirakawa | Lexus RC F (USC10) | Lexus Team KeePer Tom's | 1:25.7470 |
| 7th | 17 | Koudai Tsukakoshi / Hideki Mutou | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:25.5490 |
| 8th | 19 | Juichi Wakisaka / Yuuhi Sekiguchi | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:25.5760 |
| 9th | 100 | Naoki Yamamoto / Takuya Izawa | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:26.0090 |
| 10th | 39 | Kouhei Hirate / Heikki Kovalainen | Lexus RC F (USC10) | Lexus Team Sard | 1:26.0510 |
| 11th | 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:26.0610 |
| 12th | 15 | Takashi Kogure / Oliver Turvey | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:26.0900 |
| 13th | 1 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:26.2130 |
| 14th | 24 | Daiki Sasaki / Lucas Ordoñez | Nissan GT-R (R35) | Kondo Racing | 1:26.4000 |
| 15th | 8 | Kousuke Matsuura / Tomoki Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:26.4420 |
| 17th | 25 | Takeshi Tsuchiya / Takamitsu Matsui | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:33.9150 |
| 18th | 3 | Kazuki Hoshino / Mitsunori Takaboshi | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:33.9880 |
| 19th | 10 | André Couto / Ryuichiro Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:34.5070 |
| 20th | 65 | Haruki Kurosawa / Naoya Gamou | Mercedes-Benz SLS AMG GT3 (197) | Leon Racing | 1:34.5240 |
| 21st | 31 | Kouki Saga / Yuichi Nakayama | Toyota Prius (ZVW30) | Apr | 1:34.7000 |
| 22nd | 7 | Seiji Ara / Jörg Müller | BMW Z4 GT3 (E89) | BMW Sports Trophy Team Studie | 1:34.7700 |
| 23rd | 21 | Richard Lyons / Tomonobu Fujii | Audi R8 LMS Ultra | Audi Team Hitotsuyama | 1:34.8960 |
| 24th | 88 | Manabu Orido / Kimiya Satou | Lamborghini Gallardo GT3 (22-12226) | JLOC | 1:35.2010 |
| 25th | 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 1:35.2040 |
| 26th | 0 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-Benz SLS AMG GT3 | Goodsmile Racing & TeamUkyo | 1:35.5660 |
| 27th | 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:35.5240 |
| 28th | 55 | Shinichi Takagi / Takashi Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 1:35.6790 |
| 29th | 2 | Kazuho Takahashi / Hiroki Katou | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:34.4960 |
| 30th | 77 | Naoki Yokomizo / Kyousuke Mineo | Ferrari 458 Italia GT3 | Direction Racing | 1:35.7640 |
| 31st | 50 | Masaki Kano / Nanin Indra-Payoong | Mercedes-Benz SLS AMG GT3 (197) | Arnage Racing | 1:36.0870 |
| 32nd | 33 | Alexandre Imperatori / Kenta Yamashita | Porsche 997 GT3 R | Porsche Team KTR | 1:36.1080 |
| 33rd | 22 | Hisashi Wada / Masaki Jounai | Mercedes-Benz SLS AMG GT3 | R'Qs Motor Sports | 1:36.1750 |
| 34th | 18 | Yuuki Nakayama / Yuuji Ide | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:36.3690 |
| 35th | 86 | Shin'ya Hosokawa / Masanobu Katou | Audi R8 LMS Ultra | Audi Team Racing Tech | 1:36.6520 |
| 36th | 87 | Takayuki Aoki / Kouji Yamanishi | Lamborghini Gallardo GT-3 (09-7) | JLOC | 1:36.6590 |
| 37th | 30 | Hiroshi Koizumi / Yuuki Iwasaki | Nissan GT-R Nismo GT3 (R35) | Apr | 1:36.7920 |
| 38th | 28 | Chonsawat Asavahame / Tomáš Enge | Lamborghini Gallardo R-EX Reiter | Reiter Vattana Motorsport | 1:36.8140 |
| 39th | 60 | Akira Iida / Hiroki Yoshimoto | Lexus RC F GT3 (USC10) | LM Corsa | no time |