| 1st | 50 | Roland Ratzenberger / Keiichi Suzuki / Jean-Pierre Jabouille | Toyota 89C-V | Tenoras Toyota SARD Racing Team | 1:20.0760 |
| 2nd | 38 | Hitoshi Ogawa / Paolo Barilla | Toyota 89C-V | Toyota Team Tom's | 1:20.6940 |
| 3rd | 36 | Geoff Lees / Ross Cheever | Toyota 89C-V | Toyota Team Tom's | 1:20.9700 |
| 4th | 33 | Martin Donnelly / Johnny Herbert | Porsche 962 C | Takefuji Racing Team | 1:21.0840 |
| 5th | 100 | George Fouché / Steven Andskar | Porsche 962 C GTi | Trust Racing Team | 1:21.1880 |
| 6th | 23 | Kazuyoshi Hoshino / Toshio Suzuki | Nissan R89C | Nissan Motorsports | 1:21.2330 |
| 7th | 55 | Vern Schuppan / Eje Elgh | Porsche 962 C | Omron Racing Team | 1:21.5530 |
| 8th | 16 | Masanori Sekiya / Hideki Okada | Porsche 962 CK6 | Leyton House Racing Team | 1:22.0900 |
| 9th | 202 | Takashi Yorino / David Kennedy | Mazda 767B | Mazdaspeed | 1:22.1680 |
| 10th | 22 | Chiyomi Totani / Naoki Nagasaka / Giovanni Lavaggi | Porsche 962 CK6 | Alpha Cubic Racing Team | 1:22.2150 |
| 11th | 24 | Masahiro Hasemi / Anders Olofsson | Nissan R89C | Nissan Motorsports | 1:22.4830 |
| 12th | 9 | Bob Wollek / Frank Jelinski | Porsche 962 C | Joest Racing GmbH | 1:22.6170 |
| 13th | 8 | Henri Pescarolo / Jean-Louis Ricci | Porsche 962 C | Joest Racing GmbH | 1:22.9730 |
| 14th | 7 | Oscar Larrauri / Maurizio Sandro Sala | Porsche 962 C | The Alpha Racing With Brun | 1:22.9830 |
| 15th | 25 | Kunimitsu Takahashi / Stanley Dickens | Porsche 962 C | Advan Alpha Nova | 1:23.3510 |
| 16th | 85 | Takao Wada / Akio Morimoto | March 88S Nissan | Cabin Racing Team With Team Le Mans | 1:23.4130 |
| 17th | 26 | Kazuo Mogi / Kenji Takahashi | Porsche 962 C | Advan Alpha Tomei | 1:23.5200 |
| 18th | 27 | Akihiko Nakaya / Harald Grohs | Porsche 962 C | From A Racing | 1:23.6590 |
| 19th | 201 | Yoshimi Katayama / Pierre Dieudonné / Yojiro Terada | Mazda 767B | Mazdaspeed | 1:23.8300 |
| 20th | 6 | Jésus Pareja / Walter Brun / Costas Los | Porsche 962 C | The Alpha Racing With Brun | 1:33.4160 |
| 21st | 88 | Jiro Yoneyama / Kiyoshi Misaki / Hideo Fukuyama | BB 89R Ford | Team Rom Tech Japan (British Barn Racing Team) | 1:34.0970 |
| 22nd | 230 | Tetsuji Shiratori / Syuuji Fujii / Seisaku Suzuki | Mazda 757 | Shizumatsu Racing | 1:35.7660 |
| 23rd | 240 | Kazuhiko Oda / Tomiko Yoshikawa / Keiichi Mizutani | Mazda 757 | Katayama Racing | 1:42.4210 |
| 24th | 20 | Tim Lee-Davey / Desiré Wilson | Porsche 962 C | Team Davey | 1:42.1680 |