| 1st | 36 | Michael Krumm / Pedro de la Rosa | Toyota Supra (JZA80) | Toyota Castrol Team | 1:28.8120 |
| 2nd | 39 | Masami Kageyama / Tatsuya Tanigawa | Toyota Supra (JZA80) | Toyota Team Sard | 1:29.2130 |
| 3rd | 37 | Masanori Sekiya / Toshio Suzuki | Toyota Supra (JZA80) | Toyota Castrol Team | 1:29.3350 |
| 4th | 5 | Eiichi Tajima / Marc Goossens | Toyota Supra (JZA80) | Team 5zigen | 1:29.5360 |
| 5th | 38 | Hironori Takeuchi / Katsutomo Kaneishi | Toyota Supra (JZA80) | Toyota Castrol Team | 1:29.6170 |
| 6th | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (NA1) | Team Kunimitsu with Mooncraft | 1:29.7280 |
| 7th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:30.0550 |
| 8th | 556 | Masahiko Kageyama / Masahiko Kondou | Nissan Skyline GT-R (BCNR33) | Nismo | 1:30.1930 |
| 9th | 8 | Bertrand Gachot / Paul Belmondo | Toyota Supra (JZA80) | Powercraft | 1:30.2290 |
| 10th | 18 | Takuya Kurosawa / Katsumi Yamamoto | Honda NSX (NA1) | Mugen+Dome Project | 1:30.2730 |
| 11th | 12 | Satoshi Motoyama / Fuminori Mizuno | Nissan Skyline GT-R (BCNR33) | Hoshino Racing | 1:30.3090 |
| 12th | 2 | Aguri Suzuki / Marco Apicella | Nissan Skyline GT-R (BCNR33) | Nismo | 1:30.3220 |
| 13th | 75 | Yuuji Tachikawa / Tsuyoshi Takahashi | Nissan 300ZX-GTS | Team Le Mans | 1:30.7810 |
| 14th | 13 | Mitsuhiro Kinoshita / Mitsuo Fujimura | Nissan Skyline GT-R (BCNR33) | Endress Sports | 1:31.0490 |
| 15th | 10 | Kaoru Iida / Ralph Firman | Porsche 911 GT2 | Team TMS | 1:31.4530 |
| 16th | 30 | Youji Yamada / Kazuo Mogi | Porsche 911 GT2 | Team Take One | 1:31.5660 |
| 17th | 4 | Tatsuhiko Kaneumi / Mitsutake Koma | Porsche 911 GT2 | Suzuki Bankin | 1:33.6600 |
| 18th | 88 | Takao Wada / Hisashi Wada | Lamborghini Diablo GTR | Jloc Corsa | 1:34.5170 |
| 19th | 19 | Manabu Orido / Hideo Fukuyama | Nissan Silvia (S14) | RS-R Racing Team with Bandoh | 1:36.2850 |
| 20th | 25 | Takeshi Tsuchiya / Masaoki Nagashima | Toyota MR-2 (SW20) | Tsuchiya Engineering | 1:36.9280 |
| 21st | 51 | Masamitsu Ishihara / Katsunori Iketani | Porsche 993 RSR | Cobra Racingteam | 1:36.9730 |
| 22nd | 6 | Hiroki Katou / Takahiro Fujita | Toyota MR-2 (SW20) | Kraft | 1:38.1420 |
| 23rd | 21 | Yasushi Hitotsuyama / Kenji Yamamoto | BMW M3 (E36) | Hitotsuyama Racing | 1:38.1640 |
| 24th | 7 | Shin'ichi Yamaji / Haruhiko Matsumoto | Mazda RX-7 (FD3S) | Re Amemiya Racing | 1:38.1810 |
| 25th | 72 | Norio Makiguchi / Takeshi Asami | BMW M3 (E36) | Makiguchi Engineering | 1:39.1030 |
| 26th | 910 | Seiichi Sodeyama / Tomohiko Sunako | Porsche 993 RSR | 910 Racing | 1:39.3710 |
| 27th | 91 | Masahiro Matsunaga / Junko Mihara | Toyota MR-2 (SW20) | First Racing Team | 1:39.4570 |
| 28th | 20 | Kenji Takahashi / Hiroaki Suga | Porsche 993 RSR | AI Auto Racing Team | 1:40.1850 |
| 29th | 26 | Keiichi Suzuki / Morio Nitta | Porsche 964 Carrera RSR | Team Taisan Jr. | 1:40.3090 |
| 30th | 71 | Kaoru Hoshino / Masaki Jounai | Porsche 911 GT2 | Sigmatech Racing Team | 1:40.4730 |
| 31st | 55 | Toshihiro Fukazawa / Masaaki Nagashima | Mazda RX-7 (FD3S) | Sports Factory Racing | 1:40.8840 |
| 32nd | 27 | Tetsuya Oota / Anders Olofsson | Ferrari F355 | Team Ferrari Club of Japan | 1:41.0390 |
| 33rd | 16 | Motoji Sekine / Hiroyuki Iiri | BMW 325i coupe (E36) | Team Power Magic | 1:43.1270 |
| 34th | 70 | Yoshimi Ishibashi / Nobuo Komiya | Porsche 993 RS | Team Gaikokuya | 1:43.4360 |
| 35th | 17 | Toshihiko Nogami / Tomoyuki Hosono | Mazda RX-7 | Kageisen Racing Team | 1:43.5120 |
| 36th | 81 | Nobuyuki Ohyagi / Takayuki Kinoshita | Nissan Silvia (S14) | Team Daishin | 1:43.7310 |
| 37th | 79 | Masanori Sugiyama / Hiroaki Aoyagi | Nissan Silvia | Nac West | 1:44.5200 |
| 38th | 11 | Hiromoto Ishimori / Kinji Suzuki | Nissan Skyline | M Factory Racing | 1:45.7470 |
| 39th | 28 | Masahiro Yamazaki / Masami Sugiyama | Ferrari F355 | Team Ferrari Club of Japan | 1:46.3460 |
| 40th | 45 | Takeshi Yuasa / Kiyoaki Hanai | Nissan Silvia | Signal | 1:55.9220 |