| 1st | 64 | Kouji Yamanishi / Tom Coronel | Honda NSX (NA2) | Mobil1 Nakajima Racing | 1:37.9610 |
| 2nd | 18 | Katsutomo Kaneishi / Katsumi Yamamoto | Honda NSX (NA2) | Dome Racing Team | 1:38.6590 |
| 3rd | 36 | Masanori Sekiya / Norberto Fontana | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:39.0400 |
| 4th | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (NA2) | Team Kunimitsu with Mooncraft | 1:39.5410 |
| 5th | 2 | Masahiko Kageyama / Pedro de la Rosa | Nissan Skyline GT-R (BCNR33) | NISMO | 1:39.6590 |
| 6th | 23 | Masami Kageyama / Ralph Firman | Nissan Skyline GT-R (BCNR33) | NISMO | 1:39.9020 |
| 7th | 37 | Toshio Suzuki / Kelvin Burt | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:40.0640 |
| 8th | 50 | Takeshi Tsuchiya / Hiroki Katou | Nissan Skyline GT-R (BCNR33) | Autobacs Racing Team Aguri | 1:40.5240 |
| 9th | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (NA2) | Team Castrol Mugen | 1:40.6850 |
| 10th | 12 | Takuya Kurosawa / Michael Krumm | Nissan Skyline GT-R (BCNR33) | Team Impul | 1:40.9380 |
| 11th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:41.7870 |
| 12th | 38 | Hironori Takeuchi / Hideki Noda | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:41.8060 |
| 13th | 30 | Youji Yamada / Hideki Okada | Porsche 911 GT2 | Team Take One | 1:42.3500 |
| 14th | 5 | Marc Goossens / Yasutaka Hinoi | Toyota Supra (JZA80) | Team 5zigen | 1:42.4770 |
| 15th | 39 | Keiichi Tsuchiya / Tatsuya Tanigawa | Toyota Supra (JZA80) | Toyota Team SARD | 1:43.9020 |
| 16th | 55 | Hideshi Matsuda / Eiichi Tajima | Dodge Viper GTS-R | Team Taisan with Advan | 1:44.0650 |
| 17th | 13 | Mitsuhiro Kinoshita / Mitsuo Fujimura | Nissan Skyline GT-R (BCNR33) | Endless Sports | 1:44.0660 |
| 18th | 6 | Anders Olofsson / Shinichi Takagi | Toyota Supra (JZA80) | Inging | 1:44.1700 |
| 19th | 88 | Hisashi Wada / Naohiro Furuya | Lamborghini Diablo GT-1 | JLOC Corsa | 1:46.8710 |
| 20th | 71 | Kaoru Hoshino / Masaki Jounai | Porsche 911 GT2 | Sigmatech Racing Team | 1:47.1080 |
| 21st | 910 | Tomohiko Sunako / Atsushi Yogou | Porsche 993 RSR | 910 Racing | 1:48.4940 |
| 22nd | 21 | Yasushi Hitotsuyama / Takayuki Kinoshita | BMW M3 (E36) | Hitotsuyama Racing | 1:49.4440 |
| 23rd | 9 | Hideaki Ichimura / Syuuroku Sasaki | Porsche 993 RSR | Team Daikokuya | 1:49.6620 |
| 24th | 77 | Katsuo Kobayashi / Hideyuki Tamamoto | Subaru Impreza (GC4) | Cusco Racing | 1:50.1820 |
| 25th | 51 | Masamitsu Ishihara / Katsunori Iketani | Porsche 993 RSR | Cobra Racing Team | 1:50.4150 |
| 26th | 15 | Masahiko Kondou / Takayuki Aoki | Nissan Silvia (S14) | Xanavi Racing with NISMO Jr. | 1:50.9390 |
| 27th | 25 | Keiichi Suzuki / Shingo Tachi | Toyota MR-2 (SW20) | Team Taisan Jr. with Tsuchiya | 1:50.9950 |
| 28th | 8 | Wayne Gardner / Minoru Tanaka | Toyota Supra (JZA80) | Power Craft | 1:51.0400 |
| 29th | 61 | Akihiko Nakaya / Takahiko Hara | Mitsubishi FTO (E-DE3A) | Team Taeibon Rallyart | 1:51.1540 |
| 30th | 777 | Takao Wada / Masami Sugiyama | Lamborghini Diablo GT-1 | JLOC Corsa | 1:51.5270 |
| 31st | 27 | Tetsuya Oota / Steven Andskar | Ferrari F355 | Team Ferrari Club of Japan | 1:52.1040 |
| 32nd | 10 | Hidehiko Asou / Akira Ishikawa | Porsche 911 GT2 | Ability | 1:52.2370 |
| 33rd | 44 | Morio Nitta / Syouta Mizuno | Toyota MR-2 (SW20) | APEX | 1:52.2880 |
| 34th | 911 | Kiichi Takahashi / Syougo Kobayashi | Porsche 993 RSR | 910 Racing | 1:53.0160 |
| 35th | 81 | Hideo Fukuyama / Nobuyuki Ohyagi | Nissan Silvia (S14) | Team Daishin | 1:53.0990 |
| 36th | 70 | Yoshimi Ishibashi / Patrick van Schoote | Porsche 911 GT2 | Team Gaikokuya | 1:53.3700 |
| 37th | 89 | Kenji Kawagoe / Toshikazu Kanamori | Porsche 993/380 | Kenji Kawagoe | 1:53.7540 |
| 38th | 7 | Shin'ichi Yamaji / Haruhiko Matsumoto | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:55.1320 |
| 39th | 117 | Toshihiro Fukazawa / Tetsuo Kozai | Mazda RX-7 (FD3S) | Alta Racing Team | 1:56.7970 |
| 40th | 11 | Hiromoto Ishimori / Kazuo Miura | Nissan Skyline (HR31) | M Factory Racing Club | 1:57.9510 |
| 41st | 91 | Masahiro Matsunaga / Yasuhisa Fujiwara | Toyota MR-2 (SW20) | First Racing Team | 1:51.4430 |
| 42nd | 60 | Kumi Satou / Junko Mihara | Toyota Cavalier (TJG00) | Kraft | 1:53.6610 |
| 43rd | 79 | Masanori Sugiyama / Hiroyasu Aoyagi | Nissan Silvia (S13) | NAC West | 1:59.6540 |
| 44th | 24 | Toshiyuki Hirano / Teruhiko Someba | Nissan Skyline GTS-T (HCR32) | Hirano Motorsports | 2:03.7160 |
| 45th | 28 | Masahiro Yamazaki / Hiroaki Suga | Ferrari F355 | Team Ferrari Club of Japan | 2:05.6120 |