| 1st | 36 | Masanori Sekiya / Takuya Kurosawa | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:26.9060 |
| 2nd | 35 | Pierre-Henri Raphanel / Shin'ichi Yamaji | Toyota Supra (JZA80) | Matsumotokiyoshi Team Tom's | 1:26.9340 |
| 3rd | 37 | Toshio Suzuki / Ukyou Katayama | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:26.9680 |
| 4th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Tiger Team Le Mans | 1:27.0520 |
| 5th | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (E-NA2) | Team Kunimitsu With Mooncraft | 1:27.9190 |
| 6th | 39 | Keiichi Tsuchiya / Masahiko Kageyama | Toyota Supra (JZA80) | Toyota Team SARD | 1:27.9320 |
| 7th | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (E-NA2) | Dome Mugen Project | 1:27.9450 |
| 8th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:28.0280 |
| 9th | 64 | Tom Coronel / Hidetoshi Mitsusada | Honda NSX (E-NA2) | Mobil1 Nakajima Racing | 1:28.0680 |
| 10th | 12 | Kazuyoshi Hoshino / Masami Kageyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:28.2070 |
| 11th | 30 | Youji Yamada / Hideki Okada | McLaren F1 GTR (S70) | Team Take One | 1:28.2330 |
| 12th | 2 | Aguri Suzuki / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:28.2850 |
| 13th | 32 | Takayuki Kinoshita / Masahiko Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 1:28.2910 |
| 14th | 1 | Erik Comas / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:28.3390 |
| 15th | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (E-NA2) | Dome Mugen Project | 1:28.5140 |
| 16th | 11 | Takao Wada / Mitsuhiro Kinoshita | Nissan Skyline GT-R (BCNR33) | Endless Sports | 1:29.1580 |
| 17th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:29.4340 |
| 18th | 88 | Hisashi Wada / Naohiro Furuya | Lamborghini Diablo (ZA90DE068) | JLOC | 1:30.1850 |
| 19th | 81 | Hideo Fukuyama / Nobuyuki Ohyagi | Nissan Silvia (S15) | Team Daishin | 1:33.6040 |
| 20th | 15 | Takeshi Tsuchiya / Yuuji Ide | Nissan Silvia (S15) | NISMO | 1:34.5380 |
| 21st | 61 | Akihiko Nakaya / Ralph Firman | Mitsubishi FTO (E-DE3A) | Team Taeibon Ralliart | 1:34.7270 |
| 22nd | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 1:34.9060 |
| 23rd | 26 | Hideshi Matsuda / Dominik Schwager | Porsche 996 GT3-R | Team Taisan Jr. | 1:34.9650 |
| 24th | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:35.3560 |
| 25th | 19 | Manabu Orido / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 1:35.3860 |
| 26th | 20 | Masahiro Matsunaga / Kumi Satou | Toyota Celica (ST205) | Kosei Racing Team | 1:36.0740 |
| 27th | 71 | Masaki Jounai / Naohiro Kawano | Porsche 911 GT2 | Sigmatech Racing Team | 1:36.1360 |
| 28th | 910 | Atsushi Yogou / Dilantha Malagamuwa | Porsche 993 RSR | 910 Racing | 1:36.4730 |
| 29th | 72 | Akira Ishikawa / Kou Hirano | Mazda RX-7 (FD3S) | Okura Rotary Racing | 1:36.5670 |
| 30th | 21 | Yasushi Hitotsuyama / Daisuke Itou | BMW M3 (E36) | Hitotsuyama Racing | 1:36.7940 |
| 31st | 14 | Tetsuo Kozai / Nobuo Komiya | Nissan Silvia (S14) | Alta Racing Team | 1:37.0670 |
| 32nd | 99 | Akira Yoshitomi / Tsunefumi Hioki | Porsche 993 RSR | Team Daikokuya | 1:37.0960 |
| 33rd | 10 | Hidehiko Asou / Yasutaka Hinoi | Porsche 911 GT2 | Ability Motorsports | 1:37.4330 |
| 34th | 55 | Hiroaki Suga / Eiichi Tajima | Porsche 993 RSR | Team Taisan Jr. | 1:37.6000 |
| 35th | 111 | Jun'ichi Ikura / Yuusei Maki | Ferrari F355 | Team Gainer | 1:37.8780 |
| 36th | 70 | Yoshimi Ishibashi / Patrick van Schoote | Porsche 911 GT2 | Team Gaikokuya | 1:38.8940 |
| 37th | 355 | Takachiho Inoue / Tsuyoshi Takahashi | Ferrari F355 | Club Yellow Magic | 1:39.4090 |
| 38th | 911 | Masamitsu Ishihara / Hiroyuki Nodi | Porsche 993 RSR | 910 Racing | 1:41.0700 |
| 39th | 25 | Morio Nitta / Shinichi Takagi | Toyota MR-2 (SW20) | Momocorse Racing Team With Tsuchiya | 1:34.9410 |
| 40th | 86 | Minoru Tanaka / Eiki Amemiya | Toyota Trueno (AE86) | Kraft | 1:39.1830 |
| 41st | 84 | Seiichi Sodeyama / Yoshikuni Nakamura | Nissan Silvia (S14) | I.A.Tec Racing Team | 1:50.4560 |
| 42nd | 24 | Toshiyuki Hirano / Teruhiko Someba | Nissan Skyline GT-R (HCR32) | Hirano Motorsport | no time |