| 1st | 1 | Ukyou Katayama / Toshio Suzuki / Keiichi Tsuchiya | Toyota GT-One (TS020) | Toyota Motorsports | 1:16.3490 | 207.4680 |
| 2nd | 23 | Erik Comas / Satoshi Motoyama / Masami Kageyama | Nissan R391 | NISMO | 1:16.8140 | 206.2120 |
| 3rd | 61 | Hiroki Katou / Juichi Wakisaka | BMW V12 LM | Team Goh/Dome | 1:18.9410 | 200.6560 |
| 4th | 24 | Yojiro Terada / Franck Fréon / Kaichi Satou | Autoexe LMP99 Ford | Autoexe Motorsports | 1:22.1760 | 192.7570 |
| 5th | 21 | Akira Iida / Yasushi Hitotsuyama / Mikio Hitotsuyama | McLaren F1 GTR (S70) | Hitotsuyama Racing | 1:19.7950 | 191.3160 |
| 6th | 35 | Pierre-Henri Raphanel / Shin'ichi Yamaji / Takeshi Tsuchiya | Toyota Supra (JZA80) | Matsumotokiyoshi Team Tom's | 1:25.0120 | 186.3270 |
| 7th | 32 | Takayuki Kinoshita / Masahiko Kondou / Hironori Takeuchi | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 1:25.7490 | 184.7250 |
| 8th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Team Le Mans | 1:25.8930 | 183.3250 |
| 9th | 56 | Vincent Vosse / Xavier Pompidou | Chrysler Viper GTS-R | Chamberlain Motorsport | 1:27.0150 | 181.8490 |
| 10th | 11 | Takao Wada / Mitsuhiro Kinoshita / Yasushi Kikuchi | Nissan Skyline GT-R (BCNR33) | Endless Sports | 1:27.5810 | 180.8610 |
| 11th | 60 | Seiji Ara / Hideki Okada | Chrysler Viper GTS-R | Team Goh/Chamberlain Engineering | 1:27.8250 | 180.3590 |
| 12th | 15 | Wolfgang Kaufmann / Bob Wollek | Porsche 911 GT2 (993 GT2) | Freisinger Motorsport | 1:28.7260 | 178.5270 |
| 13th | 64 | Stéphane Ortelli / Hisashi Wada | Porsche 911 GT2 (993 GT2) | Roock Sport System/Japan | 1:30.2440 | 175.5240 |
| 14th | 16 | Yukihiro Hane / Ernst Palmberger | Porsche 911 GT2 (993 GT2) | Freisinger Motorsport | 1:30.5160 | 174.9970 |
| 15th | 28 | Kazuyuki Nishizawa / Takuya Kurosawa / Peter Dumbreck | Porsche 993 Carrera RSR | Tomei Sport | 1:31.1440 | 173.7910 |
| 16th | 17 | Katsunori Iketani / Hiroyuki Nodi | Porsche 911 GT2 (993 GT2) | Freisinger Motorsport | 1:31.1680 | 173.1220 |
| 17th | 81 | Hideshi Matsuda / Dominik Schwager | Porsche 996 GT3-R | Team Taisan Advan | 1:32.6640 | 170.9400 |
| 18th | 69 | Gerold Ried / Christian Ried / Manfred Jurasz | Porsche 911 GT2 (993 GT2) | Proton Competition | 1:34.4300 | 167.7430 |
| 19th | 80 | Eiichi Tajima / Hiroaki Suga / Morio Nitta | Porsche 993 Carrera RSR | Team Taisan Advan | 1:37.3230 | 162.7570 |
| 20th | 70 | Yoshimi Ishibashi / Patrick van Schoote / Jun Harada | Porsche 911 GT2 (993 GT2) | Team Gaikokuya | 1:36.8970 | 160.8140 |
| 21st | 10 | Hidehiko Asou / Yasutaka Hinoi / Atsushi Yogou | Porsche 911 GT2 (993 GT2) | Ability Motorsports | 1:31.4180 | 173.7200 |
| 22nd | 65 | Manabu Orido / Takashi Suzuki / Tomiko Yoshikawa | Porsche 993 Carrera RSR | Roock Sport System/Japan | 1:39.1700 | 159.7260 |
| 23rd | 91 | Masamitsu Ishihara / Kiichi Takahashi / Tomohiko Sunako | Porsche 993 Carrera RSR | 910 Racing | 1:39.8840 | 158.5840 |