| 1st | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:26.2120 |
| 2nd | 39 | Masahiko Kageyama / Ralph Firman | Toyota Supra (JZA80) | Toyota Team SARD | 1:26.3220 |
| 3rd | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Ultron Toyota Team Le Mans | 1:26.4110 |
| 4th | 36 | Masanori Sekiya / Takeshi Tsuchiya | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:26.4560 |
| 5th | 8 | Aguri Suzuki / Keiichi Tsuchiya | Honda NSX (GH-NA2) | Autobacs Racing Team Aguri | 1:26.6660 |
| 6th | 100 | Akira Iida / Naoki Hattori | Honda NSX (GH-NA2) | Team Kunimitsu With Mooncraft | 1:26.6900 |
| 7th | 30 | Youji Yamada / Hideki Okada | McLaren F1 GTR | Team Take One | 1:26.8270 |
| 8th | 12 | Kazuyoshi Hoshino / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:26.8640 |
| 9th | 64 | Daisuke Itou / Dominik Schwager | Honda NSX (GH-NA2) | Mobil1 Nakajima Racing | 1:26.9270 |
| 10th | 1 | Erik Comas / Masami Kageyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:26.9440 |
| 11th | 2 | Ukyou Katayama / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:26.9820 |
| 12th | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (GH-NA2) | Dome Mugen Project | 1:26.9970 |
| 13th | 21 | Yasushi Hitotsuyama / Akihiko Nakaya | McLaren F1 GTR | Hitotsuyama Racing | 1:27.0830 |
| 14th | 35 | Shin'ichi Yamaji / Pierre-Henri Raphanel | Toyota Supra (JZA80) | Matsumotokiyoshi Team Tom's | 1:27.1120 |
| 15th | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (GH-NA2) | Dome Mugen Project | 1:27.1510 |
| 16th | 25 | Mitsuhiro Kinoshita / Manabu Orido | Toyota Supra (JZA80) | Endless+Tsuchiya Engineering | 1:27.5730 |
| 17th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BNR34) | Hasemi Motorsports | 1:28.0370 |
| 18th | 37 | Seiji Ara / Toshio Suzuki | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:28.4220 |
| 19th | 32 | Takayuki Kinoshita / Masahiko Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 1:28.4410 |
| 20th | 88 | Naohiro Furuya / Tsuyoshi Takahashi | Lamborghini Diablo (ZA90DE068) | JLOC | 1:30.2490 |
| 21st | 55 | Eiji Yamada / Takahide Tasaki | Chrysler Viper GTS-R | Team Taisan | 1:30.4750 |
| 22nd | 81 | Nobuyuki Ohyagi / Takayuki Aoki | Nissan Silvia (S14) | Team Daishin | 1:33.4970 |
| 23rd | 28 | Hiroaki Suga / Shinsuke Shibahara | Porsche 996 GT3-R | Team Taisan Jr. With Advan | 1:34.2780 |
| 24th | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:34.3810 |
| 25th | 31 | Morio Nitta / Shinichi Takagi | Toyota MR-S (GH-ZZW30) | Super Autobacs Racing TeamWith A'pex | 1:34.5090 |
| 26th | 20 | Masahiro Matsunaga / Kumi Satou | Toyota MR-S (GH-ZZW30) | Tom's Spilit | 1:34.6160 |
| 27th | 910 | Atsushi Yogou / Hisashi Wada | Porsche 996 GT3-R | 910 Racing | 1:34.8140 |
| 28th | 26 | Hideshi Matsuda / Hideo Fukuyama | Porsche 996 GT3-R | Team Taisan Jr. With Advan | 1:35.0210 |
| 29th | 19 | Shigekazu Wakisaka / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 1:35.0590 |
| 30th | 911 | Masamitsu Ishihara / Tomohiko Sunako | Porsche 996 GT3-R | 910 Racing | 1:35.3420 |
| 31st | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC8) | Cusco Racing | 1:35.4180 |
| 32nd | 111 | Jun'ichi Ikura / Yuusei Maki | Ferrari F355 | Team Gainer | 1:35.6770 |
| 33rd | 10 | Yasutaka Hinoi / Yutaka Yamagishi | Porsche 911 GT2 | Ability Motorsports | 1:35.9900 |
| 34th | 9 | Akira Watanabe / Tsunefumi Hioki | Porsche 993 RSR 3.8 | Team Daikokuya | 1:36.4460 |
| 35th | 86 | Minoru Tanaka / Kouji Matsuda | Toyota Trueno (AE86) | Kraft | 1:36.6220 |
| 36th | 71 | Masaki Jounai / Naohiro Kawano | Porsche 911 GT2 | Sigmatech Racing Team | 1:36.8630 |
| 37th | 51 | Seiichi Sodeyama / Naofumi Omoto | Nissan Silvia (S14) | Auto Staff Racing Team | 1:37.2630 |
| 38th | 24 | Kazuyuki Nishizawa / Marco Apicella | Porsche 986 Boxster | Sport Today Racing Team | 1:38.2700 |
| 39th | 70 | Yoshimi Ishibashi / Patrick van Schoote | Porsche 911 GT2 | Team Gaikokuya | 1:38.5610 |
| 40th | 11 | Kengo Kitaura / Hikaru Miyagi | Porsche 911 GT2 | Ability Motorsports | 1:41.8350 |
| 41st | 15 | Dilantha Malagamuwa / Hideyuki Tamamoto | Mirage GT1 Chevrolet | Team Sri Lanka | 1:34.6570 |
| 42nd | 360 | Kota Sasaki / Seigou Nishizawa | Porsche 993 RSR 3.8 | Dentaire Project Racing | 1:41.2300 |
| 43rd | 101 | Hiroshi Sasaki / Mamoru Suzuki | Toyota Corolla (AE101) | Team Maind | 1:41.2300 |