| 1st | 1 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:34.7730 |
| 2nd | 36 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:34.8780 |
| 3rd | 8 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:35.0980 |
| 4th | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R (R35) | Team Impul | 1:35.0980 |
| 5th | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:35.0390 |
| 6th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:35.0420 |
| 7th | 3 | Ronnie Quintarelli / Hironobu Yasuda | Nissan GT-R (R35) | Hasemi Motor Sport | 1:34.9760 |
| 8th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R (R35) | Kondo Racing | 1:35.4590 |
| 9th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:35.5790 |
| 10th | 100 | Yuuji Ide / Kousuke Matsuura | Honda NSX (LA-NA2) | Team Kunimitsu | 1:35.7140 |
| 11th | 32 | Loic Duval / Yuuki Nakayama | Honda NSX (LA-NA2) | Nakajima Racing | 1:35.8860 |
| 12th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:35.9740 |
| 13th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Team Yoshiki & Dome Project | 1:36.0150 |
| 14th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda NSX (LA-NA2) | Keihin Real Racing | 1:36.0210 |
| 15th | 21 | Akihiro Tsuduki / Takeshi Tsuchiya | Aston Martin DBR9 | Team Nova | 1:41.0840 |
| 17th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:43.0290 |
| 18th | 81 | Takayuki Aoki / Tomonobu Fujii | Ferrari F430 | Team Daishin | 1:43.9780 |
| 19th | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 1:44.6070 |
| 20th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 (F430SC) | Jim Gainer | 1:44.9590 |
| 21st | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE-Amemiya Racing | 1:44.9240 |
| 22nd | 5 | Tetsuji Tamanaka / "Akazame Oyaji" | Vemac RD320R Porsche | Team Mach | 1:44.8550 |
| 23rd | 66 | Kouji Yamanishi / Atsushi Yogou / Marco Apicella | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 1:45.2120 |
| 24th | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 1:45.1780 |
| 25th | 31 | Yuuya Sakamoto / Hideki Yamauchi | Toyota Corolla Axio (NZE141) | Apr | 1:45.3710 |
| 26th | 87 | Hiroyuki Iiri / Hisashi Wada | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:45.4480 |
| 27th | 26 | Haruki Kurosawa / Tsubasa Abe | Porsche 996 GT3-RS | Team Taisan | 1:45.4510 |
| 28th | 30 | Kota Sasaki / Naoya Yamano | Lexus IS350 (GSE21) | Team Reckless With Shift | 1:45.5160 |
| 29th | 111 | Takaya Tsubobayashi / Daisuke Ikeda | Porsche 996 GT3-RSR | Arktech Motorsports | 1:45.5490 |
| 30th | 46 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Team Nishizawa Mola | 1:45.6730 |
| 31st | 55 | Yutaka Yamagishi / Hiroshi Koizumi | Porsche 996 GT3-RSR | Tomei Sports | 1:45.7310 |
| 32nd | 88 | Hideshi Matsuda / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:45.8780 |
| 33rd | 110 | Tatsuya Tanigawa / Kim Han Bong | Porsche 986 Boxster | Arktech Motorsports | 1:45.8820 |
| 34th | 2 | Hiroki Katou / Hiroki Yoshimoto | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:46.2980 |
| 35th | 10 | Masayuki Ueda / Masataka Kawaguchi | Ferrari 360 Modena (GF-F360) | Jim Gainer | 1:46.5010 |
| 36th | 666 | Syougo Suhou / Jun'ichirou Yamashita / Takshi Miyamoto | Vemac RD320R | Avanzza Rosso | 1:46.5230 |
| 37th | 808 | Yasushi Kikuchi / Syouzou Tagahara | BMW Z4 M Coupe (E86) | Studie Glad Racing | 1:50.3170 |