| 1st | 39 | Takuto Iguchi / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:32.7380 |
| 2nd | 46 | Ronnie Quintarelli / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:32.4810 |
| 3rd | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:33.0580 |
| 4th | 12 | Joao Paolo de Oliveira / Tsugio Matsuda | Nissan GT-R (R35) | Team Impul | 1:33.2040 |
| 5th | 6 | Kazuya Oshima / Daisuke Itou | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:33.2100 |
| 6th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R (R35) | Nismo | 1:33.4010 |
| 7th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:33.7490 |
| 8th | 36 | Andre Lotterer / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:33.7600 |
| 9th | 1 | Loic Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:33.5550 |
| 10th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:33.9140 |
| 11th | 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:34.2180 |
| 12th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:34.5200 |
| 13th | 8 | Hideki Mutou / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:34.5380 |
| 14th | 19 | Tatsuya Kataoka / Seiji Ara | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:34.9220 |
| 15th | 35 | André Couto / Juichi Wakisaka | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:36.2130 |
| 17th | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 1:42.2880 |
| 18th | 27 | Hideki Yamauchi / Yutaka Yamagishi | Ferrari F430 GTC | LMP Motorsport | 1:43.1810 |
| 19th | 66 | Hiroki Yoshimoto / Kazuki Hoshino | Aston Martin V8 Vantage GT2 | A Speed | 1:43.3310 |
| 20th | 4 | Nobuteru Taniguchi / Taku Bamba | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 1:43.5500 |
| 21st | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:43.8140 |
| 22nd | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari 458 GTC | Jim Gainer | 1:43.7730 |
| 23rd | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:43.7620 |
| 24th | 25 | Akihiro Tsuduki / Takeshi Tsuchiya | Porsche 997 GT3 RSR | Samurai Team Tsuchiya | 1:43.5040 |
| 25th | 87 | Atsushi Yogou / Manabu Orido | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:43.7500 |
| 26th | 62 | Tetsuya Yamano / Kota Sasaki | Subaru Legacy B4 (BM9) | R&D Sport | 1:44.1820 |
| 27th | 86 | Yuuya Sakamoto / Takayuki Aoki | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:44.1830 |
| 28th | 74 | Morio Nitta / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 1:44.2720 |
| 29th | 26 | Hideshi Matsuda / Kyousuke Mineo / Jun'ichirou Yamashita | Porsche 996 GT3-R | Team Taisan Cinecitta | 1:44.5110 |
| 30th | 360 | Atsushi Tanaka / Kazuyoshi Okamura | Chevrolet Corvette Z06R | Tomei Sports | 1:44.5420 |
| 31st | 31 | Kouki Saga / Yuuki Iwasaki | Toyota Corolla Axio (NZE141) | Apr | 1:44.6630 |
| 32nd | 14 | Ryou Orime / Alexandre Imperatori | Lexus IS350 (GSE21) | Team SG Changi | 1:44.8650 |
| 33rd | 41 | Shin'ichi Yamaji / Hiroshi Koizumi / Shogo Mitsuyama | Ferrari F430 GT | Team Taisan Cinecitta | 1:44.8860 |
| 34th | 34 | Hiroshi Takamori / Michael Kim / Naoya Gamou | Porsche 997 GT3 RS | Hankook KTR | 1:45.0520 |
| 35th | 69 | Hiroki Yoshida / Melvin Choo | Mosler MT900M | Thunder Asia Racing | 1:45.2130 |
| 36th | 22 | Hisashi Wada / Masaki Jounai | Vemac RD350R | R'Qs Motorsports | 1:46.5690 |
| 37th | 88 | Yuuhi Sekiguchi / Hiroyuki Iiri | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | no time |
| 38th | 7 | Carlo van Dam / Akira Mizutani | Porsche 997 GT3 R | Direction Racing | no time |