| 1st | 37 | Toshio Suzuki / Ukyou Katayama | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:24.5190 |
| 2nd | 35 | Pierre-Henri Raphanel / Shin'ichi Yamaji | Toyota Supra (JZA80) | Matsumoto-Kiyoshi Team Tom's | 1:24.6240 |
| 3rd | 39 | Keiichi Tsuchiya / Masahiko Kageyama | Toyota Supra (JZA80) | Toyota Team SARD | 1:24.6990 |
| 4th | 64 | Tom Coronel / Kouji Yamanishi | Honda NSX (E-NA2) | Mobil1 Nakajima Racing | 1:24.7100 |
| 5th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Tiger Team Le Mans | 1:24.7820 |
| 6th | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (E-NA2) | Mugen Dome Project | 1:24.8690 |
| 7th | 36 | Masanori Sekiya / Takuya Kurosawa | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:25.0710 |
| 8th | 1 | Erik Comas / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:25.3580 |
| 9th | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (E-NA2) | Dome Mugen Project | 1:25.4300 |
| 10th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:25.4440 |
| 11th | 2 | Aguri Suzuki / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:25.5100 |
| 12th | 32 | Takayuki Kinoshita / Masahiko Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo | 1:25.5560 |
| 13th | 12 | Kazuyoshi Hoshino / Masami Kageyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:25.6560 |
| 14th | 30 | Youji Yamada / Hideki Okada | McLaren F1 GTR (S70) | Team Take One | 1:25.7140 |
| 15th | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (E-NA2) | Team Kunimitsu with Mooncraft | 1:25.9640 |
| 16th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:26.4250 |
| 17th | 88 | Hisashi Wada / Naohiro Furuya | Lamborghini Diablo (ZA90DE068) | JLOC | 1:27.9140 |
| 18th | 55 | Hideshi Matsuda / Eiichi Tajima | Chrysler Viper GTS-R | Team Taisan | 1:28.6240 |
| 19th | 81 | Hideo Fukuyama / Nobuyuki Ohyagi | Nissan Silvia (S15) | Team Daishin | 1:29.9200 |
| 20th | 15 | Takeshi Tsuchiya / Yuuji Ide | Nissan Silvia (S15) | NISMO | 1:30.4310 |
| 21st | 25 | Morio Nitta / Shinichi Takagi | Toyota MR-2 (SW20) | Momocorse Racing Team | 1:31.2050 |
| 22nd | 61 | Akihiko Nakaya / Ralph Firman | Mitsubishi FTO (E-DE3A) | Team Taeivon Ralliart | 1:31.3170 |
| 23rd | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:31.4460 |
| 24th | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 1:31.4770 |
| 25th | 72 | Akira Ishikawa / Kou Hirano | Mazda RX-7 (FD3S) | Okura Rotary Racing | 1:31.5660 |
| 26th | 71 | Masaki Jounai / Naohiro Kawano | Porsche 911 GT2 | Sigmatec Racing Team | 1:31.8690 |
| 27th | 26 | Hiroaki Suga / Dominik Schwager | Porsche 911 RSR | Team Taisan Jr. | 1:32.1670 |
| 28th | 19 | Manabu Orido / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 1:32.4170 |
| 29th | 20 | Masahiro Matsunaga / Yasuhisa Fujiwara | Toyota Celica (ST205) | Kosei Racing Team | 1:32.4560 |
| 30th | 21 | Mikio Hitotsuyama / Daisuke Itou | BMW M3 (E36) | Hitotsuyama Racing | 1:33.1950 |
| 31st | 99 | Akira Yoshitomi / Tsunefumi Hioki | Porsche 993 RSR | Team Daikokuya | 1:33.3270 |
| 32nd | 86 | Minoru Tanaka / Eiki Amemiya | Toyota Trueno (AE86) | Kraft | 1:33.4910 |
| 33rd | 70 | Yoshimi Ishibashi / Hiroshi Sakai | Porsche 911 GT2 | Team Gaikokuya | 1:33.9570 |
| 34th | 10 | Hidehiko Asou / Yasutaka Hinoi | Porsche 911 GT2 | Ability Motorsports | 1:33.2710 |