| 1st | 36 | Masanori Sekiya / Takuya Kurosawa | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:48.3740 |
| 2nd | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (E-NA2) | Dome Mugen Project | 1:48.5960 |
| 3rd | 35 | Pierre-Henri Raphanel / Shin'ichi Yamaji | Toyota Supra (JZA80) | Matsumotokiyoshi Team Tom's | 1:48.6780 |
| 4th | 2 | Aguri Suzuki / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:49.0150 |
| 5th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Tiger Team Le Mans | 1:49.0210 |
| 6th | 1 | Erik Comas / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:49.1580 |
| 7th | 39 | Keiichi Tsuchiya / Masahiko Kageyama | Toyota Supra (JZA80) | Toyota Team SARD | 1:49.2230 |
| 8th | 12 | Kazuyoshi Hoshino / Masami Kageyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:49.2460 |
| 9th | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (E-NA2) | Team Kunimitsu With Mooncraft | 1:49.3200 |
| 10th | 64 | Tom Coronel / Hidetoshi Mitsusada | Honda NSX (E-NA2) | Mobil1 Nakajima Racing | 1:49.3680 |
| 11th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:49.3730 |
| 12th | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (E-NA2) | Dome Mugen Project | 1:49.4260 |
| 13th | 37 | Toshio Suzuki / Ukyou Katayama | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:49.7040 |
| 14th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:49.8080 |
| 15th | 30 | Youji Yamada / Hideki Okada | McLaren F1 GTR (S70) | Team Take One | 1:50.0060 |
| 16th | 32 | Takayuki Kinoshita / Masahiko Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 1:50.0220 |
| 17th | 88 | Hisashi Wada / Naohiro Furuya | Lamborghini Diablo (ZA90DE068) | JLOC | 1:52.3990 |
| 19th | 15 | Takeshi Tsuchiya / Yuuji Ide | Nissan Silvia (S15) | NISMO | 1:57.4850 |
| 20th | 25 | Morio Nitta / Shinichi Takagi | Toyota MR-2 (SW20) | Momocorse Racing Team With Tsuchiya | 1:57.6530 |
| 21st | 19 | Manabu Orido / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 1:57.7760 |
| 22nd | 26 | Hideshi Matsuda / Dominik Schwager | Porsche 996 GT3-R | Team Taisan Jr. | 1:57.8080 |
| 23rd | 81 | Hideo Fukuyama / Nobuyuki Ohyagi | Nissan Silvia (S15) | Team Daishin | 1:57.8510 |
| 24th | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:58.6650 |
| 25th | 86 | Minoru Tanaka / Eiki Amemiya | Toyota Trueno (AE86) | Kraft | 1:58.7410 |
| 26th | 10 | Hidehiko Asou / Yasutaka Hinoi | Porsche 911 GT2 | Ability Motorsports | 1:59.0210 |
| 27th | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 1:59.0570 |
| 28th | 61 | Akihiko Nakaya / Ralph Firman | Mitsubishi FTO (E-DE3A) | Team Taeibon Ralliart | 1:59.1950 |
| 29th | 355 | Takachiho Inoue / Tsuyoshi Takahashi | Ferrari F355 | Club Yellow Magic | 1:59.4860 |
| 30th | 910 | Atsushi Yogou / Tomohiko Sunako | Porsche 993 RSR | 910 Racing | 1:59.5500 |
| 31st | 20 | Masahiro Matsunaga / Kumi Satou | Toyota Celica (ST205) | Kosei Racing Team | 1:59.7350 |
| 32nd | 71 | Masaki Jounai / Naohiro Kawano | Porsche 911 GT2 | Sigmatech Racing Team | 1:59.7720 |
| 33rd | 55 | Hiroaki Suga / Eiichi Tajima | Porsche 993 RSR | Team Taisan Jr. | 2:00.4830 |
| 34th | 14 | Tetsuo Kozai / Nobuo Komiya | Nissan Silvia (S14) | Alta Racing Team | 2:00.5170 |
| 35th | 111 | Jun'ichi Ikura / Yuusei Maki | Ferrari F355 | Team Gainer | 2:01.2680 |
| 36th | 70 | Yoshimi Ishibashi / Patrick van Schoote | Porsche 911 GT2 | Team Gaikokuya | 2:04.0090 |
| 37th | 72 | Akira Ishikawa / Kou Hirano | Mazda RX-7 (FD3S) | Okura Rotary Racing | 2:00.3460 |
| 38th | 99 | Akira Yoshitomi / Tsunefumi Hioki | Porsche 993 RSR | Team Daikokuya | 2:01.3350 |