| 1st | 3 | Ronnie Quintarelli / Naoki Yokomizo | Nissan GT-R | Hasemi Motorsport | 1:44.5480 |
| 2nd | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:45.0360 |
| 3rd | 6 | Akira Iida / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 1:45.4460 |
| 4th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R | Nismo | 1:45.7020 |
| 5th | 35 | Tatsuya Kataoka / Peter Dumbreck | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:45.7760 |
| 6th | 36 | Andre Lotterer / Juichi Wakisaka | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 1:46.0170 |
| 7th | 22 | Michael Krumm / Masataka Yanagida | Nissan GT-R | Nismo | 1:45.9360 |
| 8th | 39 | André Couto / Toranosuke Takagi | Lexus SC430 (UZZ40) | Toyota Team Sard | 1:45.9380 |
| 9th | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R | Team Impul | 1:46.0740 |
| 10th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:46.1430 |
| 11th | 18 | Takashi Kogure / Ryou Michigami | Honda NSX (LA-NA2) | Dome Racing Team | 1:46.1790 |
| 12th | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:46.3030 |
| 13th | 17 | Toshihiro Kaneishi / Katsutomo Kaneishi | Honda NSX (LA-NA2) | Real Racing With Leon | 1:46.2660 |
| 14th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 1:46.7760 |
| 15th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 1:46.8770 |
| 16th | 32 | Katsuyuki Hiranaka / Loïc Duval | Honda NSX (LA-NA2) | Nakajima Racing | 1:46.9490 |
| 17th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 1:55.7390 |
| 18th | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:55.7510 |
| 19th | 62 | Haruki Kurosawa / Shinsuke Shibahara | Vemac RD408R | Willcom R&D Sport | 1:56.0040 |
| 20th | 77 | Kota Sasaki / Tetsuya Yamano | Subaru Impreza (GD) | Cusco Racing | 1:56.1560 |
| 21st | 110 | Hidetoshi Mitsusada / Daisuke Ikeda | Porsche 986 Boxster | Arktech Motorsports | 1:55.7100 |
| 22nd | 33 | Masami Kageyama / Mitsuhiro Kinoshita | Porsche 997 GT3 RSR | Hankook KTR | 1:56.3040 |
| 23rd | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 1:56.3280 |
| 24th | 66 | Kouji Yamanishi / Atsushi Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 1:56.4650 |
| 25th | 52 | Takuya Kurosawa / Takuto Iguchi | Lexus IS350 (GSE21) | Team Takeuchi With Shift | 1:56.7130 |
| 26th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:56.8550 |
| 27th | 111 | Tsubasa Kurosawa / Hiroshi Koizumi | Porsche 986 Boxster | Arktech Motorsports | 1:56.7890 |
| 28th | 7 | Hiroyuki Iiri / Ryou Orime | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:56.7960 |
| 29th | 88 | Hideshi Matsuda / Naohiro Furuya | Lamborghini Gallardo RG-3 | JLOC | 1:57.1190 |
| 30th | 81 | Takayuki Aoki / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Team Daishin | 1:57.2000 |
| 31st | 5 | Tetsuji Tamanaka / Naoya Yamano | Vemac RD320R | Team Mach | 1:57.2230 |
| 32nd | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 1:57.2530 |
| 33rd | 4 | Masaki Matsushita / Ryohei Sakaguchi | Vemac RD320R | Team Uematsu Nova | 1:56.6440 |
| 34th | 118 | Masayuki Kurihara / Takshi Miyamoto | Porsche 996 GT3-RS | Tomei Sports | 1:57.6250 |
| 35th | 87 | Muneyuki Kurihara / Hisashi Wada | Lamborghini Gallardo RG-3 | JLOC | 1:57.8020 |
| 36th | 27 | Takashi Inoue / Hwang Jin-Woo | Porsche 996 GT3-RSR | Team Shadow | 1:58.8650 |
| 37th | 95 | Hideki Yamauchi / Keisuke Kunimoto | Toyota MR-S (GH-ZZW30) | Apr | 1:58.1450 |
| 38th | 70 | Yutaka Yamagishi / Yoshimi Ishibashi | Porsche 996 GT3-RS | Team Gaikokuya | 1:58.1770 |
| 39th | 31 | Yuuya Sakamoto / Kyousuke Mineo | Toyota MR-S (GH-ZZW30) | Apr | 1:58.8970 |
| 40th | 666 | Jun'ichirou Yamashita / Syougo Suhou | Vemac RD320R | Avanzza Rosso | 1:58.9450 |
| 41st | 19 | Manabu Orido / Tsubasa Abe | Lexus IS350 (GSE21) | Racing Project Bandoh | 1:54.6340 |
| 42nd | 808 | Yasushi Kikuchi / Syouzou Tagahara | BMW Z4 M Coupe (S62) | Studie & Glad With Asada Racing | no time |