| 1st | 46 | Ronnie Quintarelli / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:52.3890 |
| 2nd | 39 | Takuto Iguchi / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:52.4230 |
| 3rd | 12 | Joao Paolo de Oliveira / Tsugio Matsuda | Nissan GT-R (R35) | Team Impul | 1:54.0590 |
| 4th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:53.0500 |
| 5th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R (R35) | Nismo | 1:53.3880 |
| 6th | 19 | Seiji Ara / Tatsuya Kataoka | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:54.5690 |
| 7th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:54.1290 |
| 8th | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:53.8510 |
| 9th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:54.3880 |
| 10th | 6 | Kazuya Oshima / Daisuke Itou | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:54.1710 |
| 11th | 1 | Loïc Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:54.3010 |
| 12th | 36 | Andre Lotterer / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:54.7260 |
| 13th | 38 | Kouhei Hirate / Yuuji Tachikawa | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:54.7360 |
| 14th | 8 | Takashi Kobayashi / Hideki Mutou | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:55.2390 |
| 15th | 35 | André Couto / Juichi Wakisaka | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:55.8980 |
| 17th | 4 | Taku Bamba / Nobuteru Taniguchi | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:03.1550 |
| 18th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari 458 GTC | Jim Gainer | 2:04.8540 |
| 19th | 88 | Hiroyuki Iiri / Yuuhi Sekiguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:04.9310 |
| 20th | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:04.9740 |
| 21st | 62 | Kota Sasaki / Tetsuya Yamano | Subaru Legacy B4 (BM9) | R&D Sport | 2:04.6320 |
| 22nd | 66 | Kazuki Hoshino / Hiroki Yoshimoto | Aston Martin V8 Vantage GT2 | A Speed | 2:04.0290 |
| 23rd | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:04.8410 |
| 24th | 74 | Morio Nitta / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 2:05.8250 |
| 25th | 27 | Carlo van Dam / Yutaka Yamagishi | Ferrari F430 GTC | LMP Motorsport | 2:05.3000 |
| 26th | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:05.0890 |
| 27th | 31 | Yuuki Iwasaki / Kouki Saga | Toyota Corolla Axio (NZE141) | Apr | 2:06.2350 |
| 28th | 15 | Yasuhiro Shimizu / Tim Bergmeister | Porsche 997 GT3 R | Team Art Taste | 2:06.6700 |
| 29th | 87 | Atsushi Yogou / Manabu Orido | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:05.4770 |
| 30th | 14 | Ryou Orime / Alexandre Imperatori | Lexus IS350 (GSE21) | Team SG Changi | 2:06.5860 |
| 31st | 26 | Hideshi Matsuda / Jun'ichirou Yamashita | Porsche 996 GT3-R | Team Taisan Cinecitta | 2:07.4840 |
| 32nd | 69 | Hiroki Yoshida / Melvin Choo | Mosler MT900M | Thunder Asia Racing | 2:07.2920 |
| 33rd | 25 | Akihiro Tsuduki / Takeshi Tsuchiya | Porsche 997 GT3 RSR | Samurai Team Tsuchiya | 2:05.7390 |
| 34th | 41 | Shin'ichi Yamaji / Kyousuke Mineo | Ferrari F430 GT | Team Taisan Cinecitta | 2:07.5200 |
| 35th | 5 | Haruki Kurosawa / Tetsuji Tamanaka | Vemac RD320R | Team Mach | 2:07.8400 |
| 36th | 10 | Masataka Kawaguchi / Masayuki Ueda | Ferrari F430 | Jim Gainer | 2:09.0950 |
| 37th | 86 | Yuuya Sakamoto / Takayuki Aoki | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:06.2430 |