| 1st | 64 | Tom Coronel / Hidetoshi Mitsusada | Honda NSX (E-NA2) | Mobil1 Nakajima Racing | 1:28.2030 |
| 2nd | 100 | Kunimitsu Takahashi / Akira Iida | Honda NSX (E-NA2) | Team Kunimitsu With Mooncraft | 1:28.6130 |
| 3rd | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (E-NA2) | Dome Mugen Project | 1:28.6490 |
| 4th | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (E-NA2) | Dome Mugen Project | 1:28.8220 |
| 5th | 36 | Masanori Sekiya / Takuya Kurosawa | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:28.9130 |
| 6th | 38 | Hironori Takeuchi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:29.0350 |
| 7th | 35 | Pierre-Henri Raphanel / Shin'ichi Yamaji | Toyota Supra (JZA80) | Matsumotokiyoshi Team Tom's | 1:29.1290 |
| 8th | 1 | Erik Comas / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:29.5330 |
| 9th | 12 | Kazuyoshi Hoshino / Masami Kageyama | Nissan Skyline GT-R (BNR34) | Team Impul | 1:29.6700 |
| 10th | 32 | Takayuki Kinoshita / Masahiko Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 1:29.8960 |
| 11th | 37 | Toshio Suzuki / Ukyou Katayama | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 1:29.9570 |
| 12th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Tiger Team Le Mans | 1:29.9890 |
| 13th | 2 | Aguri Suzuki / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:30.0120 |
| 14th | 39 | Keiichi Tsuchiya / Masahiko Kageyama | Toyota Supra (JZA80) | Toyota Team SARD | 1:30.1220 |
| 15th | 30 | Youji Yamada / Hideki Okada | McLaren F1 GTR (S70) | Team Take One | 1:30.5610 |
| 16th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:30.6300 |
| 17th | 88 | Hisashi Wada / Naohiro Furuya | Lamborghini Diablo (ZA90DE068) | JLOC | 1:32.7260 |
| 19th | 15 | Takeshi Tsuchiya / Yuuji Ide | Nissan Silvia (S15) | NISMO | 1:35.3810 |
| 20th | 26 | Hideshi Matsuda / Dominik Schwager | Porsche 996 GT3-R | Team Taisan Jr. | 1:35.5470 |
| 21st | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 1:35.5740 |
| 22nd | 81 | Hideo Fukuyama / Nobuyuki Ohyagi | Nissan Silvia (S15) | Team Daishin | 1:35.8210 |
| 23rd | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:35.8790 |
| 24th | 25 | Morio Nitta / Shinichi Takagi | Toyota MR-2 (SW20) | Momocorse Racing Team With Tsuchiya | 1:35.9070 |
| 25th | 61 | Akihiko Nakaya / Ralph Firman | Mitsubishi FTO (E-DE3A) | Team Taeibon Ralliart | 1:36.4880 |
| 26th | 19 | Manabu Orido / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 1:36.6530 |
| 27th | 910 | Atsushi Yogou / Dilantha Malagamuwa | Porsche 993 RSR | 910 Racing | 1:36.7340 |
| 28th | 10 | Hidehiko Asou / Yasutaka Hinoi | Porsche 911 GT2 | Ability Motorsports | 1:36.7390 |
| 29th | 20 | Masahiro Matsunaga / Kumi Satou | Toyota Celica (ST205) | Kosei Racing Team | 1:37.0600 |
| 30th | 55 | Hiroaki Suga / Eiichi Tajima | Porsche 993 RSR | Team Taisan Jr. | 1:37.0850 |
| 31st | 72 | Akira Ishikawa / Kou Hirano | Mazda RX-7 (FD3S) | Okura Rotary Racing | 1:37.1320 |
| 32nd | 111 | Jun'ichi Ikura / Yuusei Maki | Ferrari F355 | Team Gainer | 1:37.2840 |
| 33rd | 71 | Masaki Jounai / Naohiro Kawano | Porsche 911 GT2 | Sigmatech Racing Team | 1:37.2860 |
| 34th | 21 | Mikio Hitotsuyama / Daisuke Itou | BMW M3 (E36) | Hitotsuyama Racing | 1:37.7840 |
| 35th | 86 | Minoru Tanaka / Eiki Amemiya | Toyota Trueno (AE86) | Kraft | 1:38.0480 |
| 36th | 99 | Akira Yoshitomi / Tsunefumi Hioki | Porsche 993 RSR | Team Daikokuya | 1:38.1950 |
| 37th | 70 | Yoshimi Ishibashi / Kaoru Hoshino | Porsche 911 GT2 | Team Gaikokuya | 1:39.1590 |
| 38th | 9 | Yukihiro Hane / Teruyuki Tokuda | Porsche 993 RSR | Team Daikokuya | 1:40.4020 |