| 1st | 22 | Masataka Yanagida / Michael Krumm | Nissan Fairlady Z (Z33) | NISMO | 1:24.0370 |
| 2nd | 1 | Satoshi Motoyama / Richard Lyons | Nissan Fairlady Z (Z33) | NISMO | 1:24.7730 |
| 3rd | 25 | Manabu Orido / Dominik Schwager | Toyota Supra (JZA80) | Team Advan Tsuchiya | 1:25.5120 |
| 4th | 32 | Andre Lotterer / Tsugio Matsuda | Honda NSX (LA-NA2) | Nakajima Racing | 1:25.2370 |
| 5th | 38 | Toranosuke Takagi / Yuuji Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:25.4000 |
| 6th | 8 | Ralph Firman / Daisuke Itou | Honda NSX (LA-NA2) | Team Honda Racing | 1:25.0410 |
| 7th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Team Honda Racing | 1:25.4190 |
| 8th | 36 | Takeshi Tsuchiya / James Courtney | Toyota Supra (JZA80) | Toyota Team Tom's | 1:25.2020 |
| 9th | 3 | Toshihiro Kaneishi / Erik Comas | Nissan Fairlady Z (Z33) | Hasemi Motorsport | 1:25.3840 |
| 10th | 6 | Akira Iida / Juichi Wakisaka | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:25.5660 |
| 11th | 35 | Naoki Hattori / Shigekazu Wakisaka | Toyota Supra (JZA80) | KRAFT | 1:25.4540 |
| 12th | 39 | André Couto / Ronnie Quintarelli | Toyota Supra (JZA80) | Toyota Team SARD | 1:25.2440 |
| 13th | 12 | Benoit Tréluyer / Yuuji Ide | Nissan Fairlady Z (Z33) | Team Impul | 1:25.4200 |
| 14th | 100 | Sébastien Philippe / Jeremie Dufour | Honda NSX (LA-NA2) | Team Kunimitsu | 1:25.5860 |
| 15th | 37 | Tatsuya Kataoka / Sakon Yamamoto | Toyota Supra (JZA80) | Toyota Team Tom's | 1:25.7710 |
| 16th | 34 | Seiji Ara / Naoki Yokomizo | Toyota Supra (JZA80) | KRAFT | 1:26.0720 |
| 17th | 21 | Takuya Kurosawa / Hidetoshi Mitsusada | Ferrari 550 Maranello GTS | Hitotsuyama Racing | 1:28.8560 |
| 18th | 88 | Kouji Yamanishi / Hisashi Wada | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 1:30.2480 |
| 19th | 19 | Nobuteru Taniguchi / Hiroki Katou | Toyota Celica (ZZT231) | Racing Project Bandoh | 1:31.9210 |
| 20th | 31 | Minoru Tanaka / Kazuki Nakajima | Toyota MR-S (GH-ZZW30) | Apexera With Apr | 1:32.0240 |
| 21st | 13 | Mitsuhiro Kinoshita / Masami Kageyama | Nissan Fairlady Z (Z33) | Endless Sports | 1:32.5270 |
| 22nd | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (SA9VGR) | Autobacs Racing Team Aguri | 1:32.1170 |
| 23rd | 7 | Shin'ichi Yamaji / Hiroyuki Iiri | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:32.5790 |
| 24th | 0 | Haruki Kurosawa / Shin'ya Hosokawa | Honda NSX (LA-NA2) | M-Tec Co., Ltd. | 1:31.8510 |
| 25th | 46 | Kazuki Hoshino / Takayuki Aoki | Nissan Fairlady Z (Z33) | Mola | 1:32.1720 |
| 26th | 27 | Shogo Mitsuyama / Yasuo Miyagawa | Vemac RD320R | Direxiv Motorsports | 1:33.2250 |
| 27th | 10 | Hideshi Matsuda / Yasutaka Hinoi | Ferrari 360 Modena (GF-F360) | Jim Gainer | 1:33.1470 |
| 28th | 11 | Tetsuya Tanaka / Paolo Montin | Ferrari 360 Modena (GF-F360) | Jim Gainer | 1:32.9750 |
| 29th | 30 | Kota Sasaki / Tetsuya Yamano | Toyota MR-S (GH-ZZW30) | Team Reckless | 1:31.7360 |
| 30th | 2 | Akira Watanabe / Kazuho Takahashi | Vemac RD320R | Verno Tokai Dream28 | 1:33.4130 |
| 31st | 52 | Hironori Takeuchi / Katsuyuki Hiranaka | Toyota Celica (ZZT231) | Toyota Team Cerumo | 1:33.3920 |
| 32nd | 777 | Tomohiko Sunako / Kazuyoshi Takamizawa | Porsche 996 GT3-RS | 910 Racing | 1:34.2670 |
| 33rd | 112 | Atsushi Yogou / Keita Sawa | Porsche 996 GT3 (GF99663) | Arktech Motorsports | 1:34.4020 |
| 34th | 9 | Eiji Yamada / Jun'ichirou Yamashita | Mosler MT900R | A&S Racing | 1:34.6480 |
| 35th | 47 | Gou Shimizu / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Mola | 1:34.9300 |
| 36th | 72 | Takashi Inoue / Akira Hirakawa | Porsche 996 GT3-RSR | Teramoto Technical Office | 1:35.0230 |
| 37th | 26 | Yutaka Yamagishi / Kaoru Ijiri | Porsche 996 GT3-RS | Team Taisan Advan | 1:35.1250 |
| 38th | 5 | Tetsuji Tamanaka / Katsuhiko Tsutsui | Vemac RD320R | Team Mach | 1:35.4910 |
| 39th | 111 | Masaki Jounai / Hiroya Iijima | Porsche 968 (E-968) | Team LeyJun | 1:35.5700 |
| 40th | 70 | Yoshimi Ishibashi / Eiichi Tajima | Porsche 996 GT3-RS | Team Gaikokuya | 1:35.5990 |
| 41st | 62 | Shinsuke Shibahara / Tadao Uematsu | Vemac RD350R | R&D Sport | 1:35.3750 |
| 42nd | 77 | Tatsuya Tanigawa / Katsuo Kobayashi | Subaru Impreza (GDB) | Cusco Racing | 1:37.5790 |
| 43rd | 913 | Hideo Fukuyama / Haruhiko Matsumoto | Chevrolet Corvette C6 | A&S Racing | 1:45.9200 |