| 1st | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R | Nismo | 1:23.7510 |
| 2nd | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:23.7060 |
| 3rd | 12 | Sébastien Philippe / Tsugio Matsuda | Nissan GT-R | Team Impul | 1:23.6450 |
| 4th | 3 | Naoki Yokomizo / Ronnie Quintarelli | Nissan GT-R | Hasemi Motorsport | 1:23.7180 |
| 5th | 18 | Takashi Kogure / Ryou Michigami | Honda NSX (LA-NA2) | Dome Racing Team | 1:24.1140 |
| 6th | 22 | Masataka Yanagida / Michael Krumm | Nissan GT-R | Nismo | 1:23.8220 |
| 7th | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:24.1790 |
| 8th | 32 | Loïc Duval / Katsuyuki Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 1:24.1510 |
| 9th | 17 | Toshihiro Kaneishi / Katsutomo Kaneishi | Honda NSX (LA-NA2) | Real Racing With Leon | 1:23.9520 |
| 10th | 36 | Andre Lotterer / Juichi Wakisaka | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 1:24.5040 |
| 11th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 1:24.7320 |
| 12th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:24.8200 |
| 13th | 35 | Tatsuya Kataoka / Peter Dumbreck | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:25.1110 |
| 14th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 1:25.1970 |
| 15th | 39 | Toranosuke Takagi / André Couto | Lexus SC430 (UZZ40) | Toyota Team Sard | 1:25.5700 |
| 16th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 1:25.5800 |
| 17th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:31.9910 |
| 18th | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 1:31.7670 |
| 19th | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 1:32.2840 |
| 20th | 81 | Takayuki Aoki / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Team Daishin | 1:32.0220 |
| 21st | 62 | Haruki Kurosawa / Shogo Mitsuyama | Vemac RD408R | Willcom R&D Sport | 1:32.0610 |
| 22nd | 31 | Kyousuke Mineo / Yuuya Sakamoto | Toyota MR-S (GH-ZZW30) | Apr | 1:32.3090 |
| 23rd | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:32.1940 |
| 24th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 1:32.4830 |
| 25th | 4 | Ryohei Sakaguchi / Masaki Matsushita | Vemac RD320R | Team Uematsu Nova | 1:32.4080 |
| 26th | 77 | Kota Sasaki / Tetsuya Yamano | Subaru Impreza (GD) | Cusco Racing | 1:32.2270 |
| 27th | 19 | Manabu Orido / Tsubasa Abe | Toyota Celica (ZZT231) | Racing Project Bandoh | 1:32.5590 |
| 28th | 110 | Hidetoshi Mitsusada / Daisuke Ikeda | Porsche 986 Boxster | Arktech Motorsports | 1:32.7240 |
| 29th | 7 | Hiroyuki Iiri / Ryou Orime | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:33.0460 |
| 30th | 5 | Tetsuji Tamanaka / Naoya Yamano | Vemac RD320R | Team Mach | 1:33.1100 |
| 31st | 95 | Kouhei Hirate / Keisuke Kunimoto | Toyota MR-S (GH-ZZW30) | Apr | 1:33.2870 |
| 32nd | 33 | Masami Kageyama / Mitsuhiro Kinoshita | Porsche 997 GT3 RSR | Hankook KTR | 1:33.6950 |
| 33rd | 88 | Hideshi Matsuda / Naohiro Furuya | Lamborghini Gallardo RG-3 | JLOC | 1:34.1300 |
| 34th | 70 | Yutaka Yamagishi / "Akazame Oyaji" | Porsche 996 GT3-RS | Team Gaikokuya | 1:34.2180 |
| 35th | 111 | Tsubasa Kurosawa / Hiroshi Koizumi | Porsche 986 Boxster | Arktech Motorsports | 1:34.6490 |
| 36th | 87 | Muneyuki Kurihara / Hisashi Wada | Lamborghini Gallardo RG-3 | JLOC | 1:35.1020 |
| 37th | 666 | Syougo Suhou / Jun'ichirou Yamashita | Vemac RD320R | Avanzza Rosso | 1:36.3740 |
| 38th | 66 | Kouji Yamanishi / Atsushi Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | no time |
| 39th | 52 | Takuya Kurosawa / Takuto Iguchi | Lexus IS350 (GSE21) | Team Takeuchi With Shift | no time |