| 1st | 18 | Loic Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:23.8150 |
| 2nd | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:24.0550 |
| 3rd | 12 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | Team Impul | 1:24.2730 |
| 4th | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:24.3490 |
| 5th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:24.3950 |
| 6th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:24.3990 |
| 7th | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:24.8880 |
| 8th | 1 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:24.4200 |
| 9th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:24.6710 |
| 10th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:24.8250 |
| 11th | 8 | Ralph Firman / Yuuji Ide | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:25.3660 |
| 12th | 24 | Joao Paolo de Oliveira / Hironobu Yasuda | Nissan GT-R (R35) | Kondo Racing | 1:26.3970 |
| 13th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | no time |
| 15th | 86 | Kouji Yamanishi / Yuuhi Sekiguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:31.3410 |
| 16th | 46 | Naoki Yokomizo / Tsubasa Abe | Nissan Fairlady Z (Z33) | Mola | 1:31.8960 |
| 17th | 31 | Kouki Saga / Kousuke Matsuura | Toyota Corolla Axio (NZE141) | Apr | 1:32.1360 |
| 18th | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 1:32.2010 |
| 19th | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 1:32.2800 |
| 20th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:32.2960 |
| 21st | 5 | Tetsuji Tamanaka / Haruki Kurosawa | Vemac RD408R | Team Mach | 1:32.3110 |
| 22nd | 2 | Hiroki Katou / Hiroshi Hamaguchi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:32.7700 |
| 23rd | 87 | Hiroyuki Iiri / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:33.2270 |
| 24th | 66 | Hideshi Matsuda / Hiroki Yoshimoto | Aston Martin V8 Vantage GT2 | A Speed | 1:33.4770 |
| 25th | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE Amemiya Racing | 1:32.3210 |
| 26th | 3 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Hasemi Motor Sport | 1:32.4960 |
| 27th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 | Jim Gainer | 1:32.5180 |
| 28th | 88 | Atsushi Yogou / Shin'ya Hosokawa | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:32.5720 |
| 29th | 26 | Igor Sushko / Masayuki Ueda | Porsche 996 GT3-R | Team Taisan | 1:32.9700 |
| 30th | 27 | Yutaka Yamagishi / Hiroshi Koizumi | Ferrari F430 GTC | LMP Motorsport | 1:33.0680 |
| 31st | 9 | Taku Bamba / Masahiro Sasaki | Porsche 996 GT3-RSR | Good Smile Racing With Cox | 1:33.3500 |
| 32nd | 62 | Tetsuya Yamano / Kota Sasaki | Subaru Legacy B4 (BM9) | R&D Sport | 1:33.7730 |
| 33rd | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 1:33.7870 |
| 34th | 365 | Melvin Choo / Tim Sugden | Mosler MT900M | 365 Thunder Asia Racing | 1:36.0910 |