| 1st | 60 | Naoki Hattori / Ralf Schumacher | McLaren F1 GTR | Team Lark McLaren GTR | 1:45.7450 |
| 2nd | 8 | Tom Kristensen / Tatsuya Tanigawa | Toyota Supra (JZA80) | FET Racing Team | 1:46.4470 |
| 3rd | 30 | Youji Yamada / Eiichi Tajima | Porsche 911 GT2 | Team Take One | 1:46.5440 |
| 4th | 37 | Erik Comas / Hironori Takeuchi | Toyota Supra (JZA80) | Toyota Castrol Team | 1:46.6640 |
| 5th | 36 | Masanori Sekiya / Pedro de la Rosa | Toyota Supra (JZA80) | Toyota Castrol Team | 1:46.7470 |
| 6th | 61 | David Brabham / John Nielsen | McLaren F1 GTR | Team Lark McLaren GTR | 1:46.9830 |
| 7th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 1:47.6720 |
| 8th | 39 | Wayne Gardner / Alain Ferté | Toyota Supra (JZA80) | Toyota Team SARD | 1:47.8850 |
| 9th | 34 | Hideshi Matsuda / Osamu Nakako | Porsche 911 GT2 | Team Taisan | 1:48.1630 |
| 10th | 1 | Kazuyoshi Hoshino / Masahiko Kageyama | Nissan Skyline GT-R (BCNR33) | Hoshino Racing | 1:48.2420 |
| 11th | 100 | Kunimitsu Takahashi / Keiichi Tsuchiya | Honda NSX (NA1) | Team Kunimitsu | 1:48.5750 |
| 12th | 35 | Oscar Larrauri / Takeshi Tsuchiya | Porsche 911 GT2 | Team Taisan | 1:48.6960 |
| 13th | 2 | Aguri Suzuki / Hideo Fukuyama | Nissan Skyline GT-R (BCNR33) | Nismo Team Zexel | 1:48.9290 |
| 14th | 5 | Kaoru Iida / Tetsuya Oota | Porsche 911 GT2 | Taku Motor Sports | 1:49.9000 |
| 15th | 556 | Toshio Suzuki / Masahiko Kondou | Nissan Skyline GT-R (BCNR33) | Nismo Kure Racing | 1:49.3060 |
| 16th | 55 | Kenji Tohira / Hiroyuki Kawai | Nissan Skyline GT-R (BCNR33) | Limit Motor Sports | 1:51.1350 |
| 17th | 43 | Yukio Okamoto / Yasutaka Hinoi | Porsche 911 Carrera RS | Team BMB Minijuke | 1:51.2230 |
| 18th | 25 | Masami Kageyama / Yuuji Tachikawa | Nissan 300ZX-GTS | Bros Factory | 1:51.4270 |
| 19th | 19 | Katsuo Kobayashi / Naohiro Furuya | Nissan Skyline (BNR32) | Team-Jun | 1:52.0720 |
| 20th | 69 | Kenji Kawagoe / Syunji Kasuya | Porsche 911 GT2 | Kenji Kawagoe | 1:52.6620 |
| 21st | 12 | Satoshi Motoyama / Yuuji Ide | Nissan Silvia (S14) | Hoshino Racing | 1:54.0420 |
| 22nd | 26 | Keiichi Suzuki / Morio Nitta | Porsche 964 Carrera RSR | Team Taisan Jr. | 1:54.1760 |
| 23rd | 72 | Takayuki Kinoshita / Norio Makiguchi | BMW M3 (E30) | Makiguchi Engineering | 1:54.4410 |
| 24th | 91 | Masahiro Matsunaga / Junko Mihara | Toyota MR-2 (SW-20) | First Racing Team | 1:55.0660 |
| 25th | 910 | Seiichi Sodeyama / Naoki Nagasaka | Porsche 993 RSR | 910 Racing | 1:55.1350 |
| 26th | 7 | Shin'ichi Yamaji / Hisashi Wada | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:55.6270 |
| 27th | 15 | Motoji Sekine / Takahiro Itou | Porsche 911 Turbo | Prova Motor Sports | 1:56.6790 |
| 28th | 6 | Tetsuya Kawasaki / Nendai Fukushima | Toyota MR-2 (SW-20) | imuraya Racing Team | 1:56.8140 |
| 29th | 21 | Kenji Yamamoto / Mikio Hitotsuyama | BMW M3 (E36) | Hitotsuyama Racing | 1:57.7070 |
| 30th | 38 | Adrian Fu / Masaoki Nagashima | Porsche Carrera RS | Team Taisan Jr. | 1:57.9220 |
| 31st | 70 | Yoshimi Ishibashi / Kaoru Hoshino | Porsche 993 RS | Yoshimi Ishibashi | 1:58.0060 |
| 32nd | 51 | Masamitsu Ishihara / Hiroyuki Nodi | Porsche 911 Carrera RSR | Cobra Racing Team | 1:58.2940 |
| 33rd | 95 | Nobuyuki Ohyagi / Tsuneaki Mankumo | Nissan Silvia (PS13) | Team Daishin | 1:59.0140 |
| 34th | 18 | Syougo Kobayashi / Hiroyuki Enomoto | Porsche | Goldenbear Sportswear R.T. | 1:59.0510 |
| 35th | 11 | Hiromoto Ishimori / Masuo Saitou | Nissan Skyline GTS-R (HR31) | M Factory Racing Club | 1:59.4730 |
| 36th | 31 | Katsunori Iketani / Kazuo Mogi | Porsche 993 Carrera RS | Cobra Racing Team | 1:54.9710 |