| 1st | 18 | Juichi Wakisaka / Katsutomo Kaneishi | Honda NSX (GH-NA2) | Dome Mugen Project | 2:00.4260 |
| 2nd | 16 | Osamu Nakako / Ryou Michigami | Honda NSX (GH-NA2) | Dome Mugen Project | 2:00.6160 |
| 3rd | 32 | Masahiko Kondou / Yuuji Tachikawa | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo With Key's | 2:01.9040 |
| 4th | 36 | Masanori Sekiya / Takeshi Tsuchiya | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 2:02.1290 |
| 5th | 64 | Daisuke Itou / Dominik Schwager | Honda NSX (GH-NA2) | Mobil1 Nakajima Racing | 2:02.2590 |
| 6th | 3 | Masahiro Hasemi / Tetsuya Tanaka | Nissan Skyline GT-R (BNR34) | Hasemi Motorsports | 2:02.2850 |
| 7th | 12 | Kazuyoshi Hoshino / Satoshi Motoyama | Nissan Skyline GT-R (BNR34) | Team Impul | 2:02.4710 |
| 8th | 8 | Aguri Suzuki / Keiichi Tsuchiya | Honda NSX (E-NA2) | Autobacs Racing Team Aguri | 2:02.4970 |
| 9th | 2 | Ukyou Katayama / Michael Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 2:02.8510 |
| 10th | 1 | Erik Comas / Masami Kageyama | Nissan Skyline GT-R (BNR34) | NISMO | 2:03.0690 |
| 11th | 39 | Masahiko Kageyama / Ralph Firman | Toyota Supra (JZA80) | Toyota Team SARD | 2:03.1790 |
| 12th | 25 | Mitsuhiro Kinoshita / Manabu Orido | Toyota Supra (JZA80) | Endless+Tsuchiya Engineering | 2:03.3840 |
| 13th | 100 | Akira Iida / Naoki Hattori | Honda NSX (GH-NA2) | Team Kunimitsu With Mooncraft | 2:03.4750 |
| 14th | 6 | Hideki Noda / Wayne Gardner | Toyota Supra (JZA80) | Esso Ultron Toyota Team Le Mans | 2:03.4890 |
| 15th | 37 | Seiji Ara / Shin'ichi Yamaji | Toyota Supra (JZA80) | Toyota Castrol Team Tom's | 2:04.0030 |
| 16th | 88 | Naohiro Furuya / Tsuyoshi Takahashi | Lamborghini Diablo (ZA90DE068) | JLOC | 2:05.2630 |
| 17th | 7 | Haruhiko Matsumoto / Tetsuya Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:12.6290 |
| 18th | 19 | Shigekazu Wakisaka / Takahiko Hara | Toyota Celica (ST205) | Racing Project Bandoh | 2:12.6370 |
| 19th | 26 | Hideo Fukuyama / Dilantha Malagamuwa | Porsche 996 GT3-R | Team Taisan Jr. With Advan | 2:12.8460 |
| 20th | 31 | Morio Nitta / Shinichi Takagi | Toyota MR-S (GH-ZZW30) | Super Autobacs A'pex MR-S | 2:13.3910 |
| 21st | 77 | Katsuo Kobayashi / Tatsuya Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 2:14.6100 |
| 22nd | 70 | Yoshimi Ishibashi / Patrick van Schoote | Porsche 911 GT2 (993GT2) | Team Gaikokuya | 2:21.4270 |
| 23rd | 5 | Key Soon Yue / Ila Ridak | Porsche 911RS (993 Carrera) | Porsche Club Malaysia | 2:35.3050 |
| 24th | 55 | Eiji Yamada / Atsushi Yogou | Chrysler Viper GTS-R | Team Taisan Advan | no time |