| 1st | 8 | Ralph Firman / Daisuke Itou | Honda NSX (LA-NA2) | Team Honda Racing | 1:59.3870 |
| 2nd | 32 | Andre Lotterer / Tsugio Matsuda | Honda NSX (LA-NA2) | Nakajima Racing | 1:59.9810 |
| 3rd | 6 | Akira Iida / Juichi Wakisaka | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:59.4340 |
| 4th | 1 | Satoshi Motoyama / Richard Lyons | Nissan Fairlady Z (Z33) | NISMO | 1:59.5130 |
| 5th | 12 | Benoit Tréluyer / Yuuji Ide | Nissan Fairlady Z (Z33) | Team Impul | 1:59.5320 |
| 6th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Team Honda Racing | 1:59.9240 |
| 7th | 36 | Takeshi Tsuchiya / James Courtney | Toyota Supra (JZA80) | Toyota Team Tom's | 2:00.0270 |
| 8th | 38 | Yuuji Tachikawa / Toranosuke Takagi | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:59.9870 |
| 9th | 3 | Toshihiro Kaneishi / Erik Comas | Nissan Fairlady Z (Z33) | Hasemi Motorsport | 2:00.1160 |
| 10th | 25 | Manabu Orido / Dominik Schwager | Toyota Supra (JZA80) | Team Advan Tsuchiya | 2:00.2830 |
| 11th | 22 | Masataka Yanagida / Michael Krumm | Nissan Fairlady Z (Z33) | NISMO | 2:00.1530 |
| 12th | 35 | Shigekazu Wakisaka / Naoki Hattori | Toyota Supra (JZA80) | KRAFT | 2:01.2210 |
| 13th | 21 | Takuya Kurosawa / Hidetoshi Mitsusada | Ferrari 550 Maranello GTS | Hitotsuyama Racing | 2:00.2280 |
| 14th | 37 | Tatsuya Kataoka / Sakon Yamamoto | Toyota Supra (JZA80) | Toyota Team Tom's | 2:00.2770 |
| 15th | 100 | Sébastien Philippe / Jeremie Dufour | Honda NSX (LA-NA2) | Team Kunimitsu | 2:00.5450 |
| 16th | 34 | Naoki Yokomizo / Seiji Ara | Toyota Supra (JZA80) | KRAFT | 2:00.9120 |
| 17th | 39 | André Couto / Ronnie Quintarelli | Toyota Supra (JZA80) | Toyota Team SARD | 2:00.9140 |
| 19th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (SA9VGR) | Autobacs Racing Team Aguri | 2:09.6930 |
| 20th | 30 | Kota Sasaki / Tetsuya Yamano | Toyota MR-S (GH-ZZW30) | Team Reckless | 2:08.5980 |
| 21st | 7 | Shin'ichi Yamaji / Hiroyuki Iiri | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:09.1280 |
| 22nd | 31 | Minoru Tanaka / Kazuki Nakajima | Toyota MR-S (GH-ZZW30) | Apexera With Apr | 2:09.5770 |
| 23rd | 27 | Shogo Mitsuyama / Yasuo Miyagawa | Vemac RD320R | Direxiv Motorsports | 2:09.2220 |
| 24th | 13 | Mitsuhiro Kinoshita / Masami Kageyama | Nissan Fairlady Z (Z33) | Endless Sports | 2:09.6460 |
| 25th | 0 | Haruki Kurosawa / Shin'ya Hosokawa | Honda NSX (LA-NA2) | M-Tec Co.Ltd. | 2:09.9480 |
| 26th | 46 | Kazuki Hoshino / Takayuki Aoki | Nissan Fairlady Z (Z33) | Mola | 2:09.6490 |
| 27th | 2 | Akira Watanabe / Kazuho Takahashi | Vemac RD320R | Verno Tokai Dream28 | 2:09.6250 |
| 28th | 19 | Nobuteru Taniguchi / Hiroki Katou | Toyota Celica (ZZT231) | Racing Project Bandoh | 2:10.0420 |
| 29th | 11 | Tetsuya Tanaka / Paolo Montin | Ferrari 360 Modena (GF-F360) | Jim Gainer | 2:10.9560 |
| 30th | 77 | Tatsuya Tanigawa / Katsuo Kobayashi | Subaru Impreza (GDB) | Cusco Racing | 2:09.7380 |
| 31st | 5 | Katsuhiko Tsutsui / Tetsuji Tamanaka | Vemac RD320R | Team Mach | 2:11.0020 |
| 32nd | 15 | Norman Simon / Tengku Djan Ley | Lotus Exige 300RR | Amprex Motorsports | 2:11.1710 |
| 33rd | 26 | Yutaka Yamagishi / Kaoru Ijiri | Porsche 996 GT3-RS | Team Taisan Advan | 2:11.4670 |
| 34th | 9 | Eiji Yamada / Jun'ichirou Yamashita | Mosler MT900R | A&S Racing | 2:11.5830 |
| 35th | 777 | Tomohiko Sunako / Kazuyoshi Takamizawa | Porsche 996 GT3-RS | 910 Racing | 2:11.6570 |
| 36th | 47 | Gou Shimizu / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Mola | 2:11.6810 |
| 37th | 52 | Hironori Takeuchi / Katsuyuki Hiranaka | Toyota Celica (ZZT231) | Toyota Team Cerumo | 2:11.7040 |
| 38th | 112 | Atsushi Yogou / Keita Sawa | Porsche 996 GT3-R | Arktech Motorsports | 2:12.1300 |
| 39th | 72 | Akira Hirakawa / Hiroshi Wada | Porsche 996 GT3-RSR | Teramoto Technical Office | 2:13.9400 |
| 40th | 110 | Takashi Ooi / Ichijou Suga | Porsche 986 Boxster | Arktech Motorsports | 2:14.2120 |
| 41st | 111 | Masaki Jounai / Hiroya Iijima | Porsche 968 (E-968) | Team LeyJun | 2:15.2360 |
| 42nd | 70 | Yoshimi Ishibashi / Eiichi Tajima | Porsche 996 GT3-RS | Team Gaikokuya | 2:16.5740 |
| 43rd | 62 | Tadao Uematsu / Shinsuke Shibahara | Vemac RD350R | Willcom R&D Sport | 2:10.2710 |
| 44th | 10 | Hideshi Matsuda / Yasutaka Hinoi | Ferrari 360 Modena (GF-F360) | Jim Gainer | 2:11.1090 |
| 45th | 913 | Hideo Fukuyama / Syougo Suhou | Chevrolet Corvette C6 | A&S Racing | 2:15.1060 |