| 1st | 22 | Michael Krumm / Masataka Yanagida | Nissan GT-R | Nismo | 1:55.3100 |
| 2nd | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:55.5580 |
| 3rd | 17 | Toshihiro Kaneishi / Katsutomo Kaneishi | Honda NSX (LA-NA2) | Real Racing With Leon | 1:55.9310 |
| 4th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 1:55.9750 |
| 5th | 18 | Takashi Kogure / Ryou Michigami | Honda NSX (LA-NA2) | Dome Racing Team | 1:56.0870 |
| 6th | 32 | Loïc Duval / Katsuyuki Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 1:56.3800 |
| 7th | 12 | Sébastien Philippe / Tsugio Matsuda | Nissan GT-R | Team Impul | 1:56.4650 |
| 8th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 1:56.4050 |
| 9th | 3 | Ronnie Quintarelli / Naoki Yokomizo | Nissan GT-R | Hasemi Motorsport | 1:56.6910 |
| 10th | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:55.9940 |
| 11th | 35 | Tatsuya Kataoka / Peter Dumbreck | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:57.1850 |
| 12th | 36 | Andre Lotterer / Juichi Wakisaka | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 1:57.2550 |
| 13th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 1:57.2940 |
| 14th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:57.6030 |
| 15th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R | Nismo | 1:59.0900 |
| 16th | 39 | André Couto / Toranosuke Takagi | Lexus SC430 (UZZ40) | Toyota Team Sard | 1:58.5700 |
| 17th | 77 | Tetsuya Yamano / Kota Sasaki | Subaru Impreza (GD) | Cusco Racing | 2:06.9300 |
| 18th | 19 | Manabu Orido / Tsubasa Abe | Toyota Celica (ZZT231) | Racing Project Bandoh | 2:08.4130 |
| 19th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:08.4480 |
| 20th | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 2:08.3840 |
| 21st | 81 | Takayuki Aoki / Tomonobu Fujii | Nissan Fairlady Z (Z33) | Team Daishin | 2:08.3240 |
| 22nd | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:08.6130 |
| 23rd | 4 | Ryohei Sakaguchi / Masaki Matsushita | Vemac RD320R | Team Uematsu Nova | 2:08.5020 |
| 24th | 110 | Daisuke Ikeda / Hidetoshi Mitsusada | Porsche 986 Boxster | Arktech Motorsports | 2:08.4660 |
| 25th | 31 | Yuuya Sakamoto / Kyousuke Mineo | Toyota MR-S (GH-ZZW30) | Apr | 2:08.7620 |
| 26th | 7 | Hiroyuki Iiri / Ryou Orime | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:08.5600 |
| 27th | 62 | Haruki Kurosawa / Shogo Mitsuyama | Vemac RD408R | Willcom R&D Sport | 2:08.8170 |
| 28th | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 2:09.0290 |
| 29th | 95 | Kouhei Hirate / Keisuke Kunimoto | Toyota MR-S (GH-ZZW30) | Apr | 2:09.1670 |
| 30th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 2:09.1940 |
| 31st | 66 | Kouji Yamanishi / Atsushi Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:09.2700 |
| 32nd | 111 | Hiroshi Koizumi / Tsubasa Kurosawa | Porsche 986 Boxster | Arktech Motorsports | 2:09.3880 |
| 33rd | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 2:09.4170 |
| 34th | 5 | Tetsuji Tamanaka / Naoya Yamano | Vemac RD320R | Team Mach | 2:09.5590 |
| 35th | 52 | Takuya Kurosawa / Takuto Iguchi | Lexus IS350 (GSE21) | Team Takeuchi With Shift | 2:10.4220 |
| 36th | 88 | Hideshi Matsuda / Naohiro Furuya | Lamborghini Gallardo RG-3 | JLOC | 2:10.5990 |
| 37th | 70 | Yutaka Yamagishi / Yoshimi Ishibashi | Porsche 996 GT3-RS | Team Gaikokuya | 2:11.6360 |
| 38th | 87 | Muneyuki Kurihara / Hisashi Wada | Lamborghini Gallardo RG-3 | JLOC | no time |