| 1st | 18 | Takashi Kogure / Carlo van Dam | Honda HSV-010 GT (H010) | Weider Honda Racing | 1:55.3210 |
| 2nd | 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:55.5030 |
| 3rd | 23 | Satoshi Motoyama / Michael Krumm | Nissan GT-R (R35) | Nismo | 1:55.6650 |
| 4th | 12 | Tsugio Matsuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:55.7020 |
| 5th | 36 | Loic Duval / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:56.1450 |
| 6th | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:56.4050 |
| 7th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:56.5980 |
| 8th | 35 | Yuuji Kunimoto / Andrea Caldarelli | Lexus SC430 (UZZ40) | Lexus Team KeePer Kraft | 1:57.2680 |
| 9th | 19 | Seiji Ara / André Couto | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:57.1720 |
| 10th | 39 | Juichi Wakisaka / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:57.2810 |
| 11th | 1 | Masataka Yanagida / Ronnie Quintarelli | Nissan GT-R (R35) | Mola | 1:58.0440 |
| 12th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:58.0920 |
| 13th | 8 | Ralph Firman / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:58.2150 |
| 14th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:58.8460 |
| 15th | 6 | Daisuke Itou / Kazuya Oshima | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | no time |
| 17th | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:04.2620 |
| 18th | 87 | Kouji Yamanishi / Hideki Yamauchi | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:05.3710 |
| 19th | 911 | Kyousuke Mineo / Naoki Yokomizo | Porsche 997 GT3 R | Team Taisan Endless | 2:05.3950 |
| 20th | 88 | Manabu Orido / Takayuki Aoki | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:05.8510 |
| 21st | 52 | Hironori Takeuchi / Haruki Kurosawa | Mercedes-Benz SLS AMG GT3 | Green Tec & Leon With Shift | 2:05.8820 |
| 22nd | 3 | Yuuhi Sekiguchi / Katsumasa Chiyo | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 2:06.7950 |
| 23rd | 0 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:06.8330 |
| 24th | 31 | Morio Nitta / Kouki Saga | Toyota Prius (ZVW30) | Apr | 2:06.8690 |
| 25th | 4 | Taku Bamba / Masahiro Sasaki | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:07.1740 |
| 26th | 2 | Kazuho Takahashi / Hiroki Katou | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:05.5150 |
| 27th | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:07.2080 |
| 28th | 61 | Tetsuya Yamano / Kota Sasaki | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 2:07.4800 |
| 29th | 27 | Yutaka Yamagishi / Takuto Iguchi | Ferrari F430 GTC | LMP Motorsport | 2:07.9070 |
| 30th | 66 | Hiroki Yoshimoto / Kazuki Hoshino | Aston Martin V12 Vantage GT3 | A Speed | 2:08.5550 |
| 31st | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Audi R8 LMS ultra (AS42AOFGT3) | Gainer | 2:08.6300 |
| 32nd | 99 | Michael Kim / Hideto Yasuoka / Frank Yu | Audi R8 LMS | Hitotsuyama Racing | 2:08.8480 |
| 33rd | 69 | Fairuz Fauzy / Hiroki Yoshida | Mosler MT900M | Thunder Asia Racing | 2:08.9240 |
| 34th | 30 | Yuuki Iwasaki / Yuuya Sakamoto | Audi R8 LMS ultra (ABA-42BYHF) | Apr | 2:09.0410 |
| 35th | 21 | Akihiro Tsuduki / Cyndie Allemann | Audi R8 LMS | Hitotsuyama Racing | 2:09.1510 |
| 36th | 360 | Atsushi Tanaka / Takuya Shirasaka | Callaway Corvette Z06R GT3 | Tomei Sports | 2:09.3230 |
| 37th | 22 | Hisashi Wada / Masaki Jounai | Vemac RD320R | R'Qs Motorsports | 2:10.5290 |
| 38th | 86 | Jun'ichirou Yamashita / Hideshi Matsuda | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | no time |