| 1st | 46 | Ronnie Quintarelli / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:16.1450 |
| 2nd | 39 | Takuto Iguchi / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:17.3160 |
| 3rd | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:17.2330 |
| 4th | 32 | Yuuki Nakayama / Ryou Michigami | Honda HSV-010 GT (H010) | Nakajima Racing | 1:17.1670 |
| 5th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:16.8400 |
| 6th | 36 | Andre Lotterer / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:17.2450 |
| 7th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:17.2920 |
| 8th | 35 | André Couto / Juichi Wakisaka | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:17.3210 |
| 9th | 38 | Kouhei Hirate / Yuuji Tachikawa | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:17.3020 |
| 10th | 12 | Tsugio Matsuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:17.1020 |
| 11th | 1 | Loïc Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:17.4620 |
| 12th | 6 | Kazuya Oshima / Daisuke Itou | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:17.5920 |
| 13th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R (R35) | Nismo | 1:17.8850 |
| 14th | 19 | Tatsuya Kataoka / Seiji Ara | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:18.1430 |
| 15th | 8 | Hideki Mutou / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:18.3850 |
| 17th | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 1:24.7190 |
| 18th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari 458 GTC | Jim Gainer | 1:24.9220 |
| 19th | 14 | Ryou Orime / Alexandre Imperatori | Lexus IS350 (GSE21) | Team SG Changi | 1:24.3150 |
| 20th | 62 | Tetsuya Yamano / Kota Sasaki | Subaru Legacy B4 (BM9) | R&D Sport | 1:24.6430 |
| 21st | 74 | Morio Nitta / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 1:24.9550 |
| 22nd | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 1:24.2020 |
| 23rd | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 1:24.6990 |
| 24th | 4 | Nobuteru Taniguchi / Taku Bamba | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 1:25.1660 |
| 25th | 87 | Manabu Orido / Atsushi Yogou | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:25.2200 |
| 26th | 25 | Akihiro Tsuduki / Takeshi Tsuchiya | Porsche 997 GT3 RSR | Samurai Team Tsuchiya | 1:24.9860 |
| 27th | 69 | Naoki Yokomizo / Hiroki Yoshida | Mosler MT900M | Thunder Asia Racing | 1:25.3750 |
| 28th | 27 | Hideki Yamauchi / Yutaka Yamagishi | Ferrari F430 GTC | LMP Motorsport | 1:25.4580 |
| 29th | 88 | Yuuhi Sekiguchi / Hiroyuki Iiri | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:25.7360 |
| 30th | 31 | Kouki Saga / Yuuki Iwasaki | Toyota Corolla Axio (NZE141) | Apr | 1:25.8830 |
| 31st | 86 | Takayuki Aoki / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 1:26.2560 |
| 32nd | 22 | Hisashi Wada / Masaki Jounai | Vemac RD350R | R'Qs Motorsports | 1:26.7310 |
| 33rd | 7 | Carlo van Dam / Akira Mizutani | Porsche 997 GT3 R | Direction Racing | 1:25.7470 |
| 34th | 66 | Kazuki Hoshino / Hiroki Yoshimoto | Aston Martin V8 Vantage GT2 | A Speed | 1:26.1720 |
| 35th | 5 | Haruki Kurosawa / Katsuhiko Tsutsui | Vemac RD320R | Team Mach | 1:26.9000 |
| 36th | 41 | Hiroshi Koizumi / Shin'ichi Yamaji | Ferrari F430 GT | Team Taisan Cinecitta | 1:27.7150 |
| 37th | 26 | Kyousuke Mineo / Jun'ichirou Yamashita | Porsche 996 GT3-R | Team Taisan Cinecitta | no time |
| 38th | 360 | Atsushi Tanaka / Kazuyoshi Okamura | Chevrolet Corvette Z06R | Tomei Sports | no time |