| 1st | 22 | Michael Krumm / Dominik Schwager / Masataka Yanagida | Nissan GT-R | Nismo | 2:07.7530 |
| 2nd | 17 | Toshihiro Kaneishi / Katsutomo Kaneishi / Koudai Tsukakoshi | Honda NSX (LA-NA2) | Real Racing With Leon | 2:08.4210 |
| 3rd | 1 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 2:08.4570 |
| 4th | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R | Team Impul | 2:08.7060 |
| 5th | 36 | Carlo van Dam / Andre Lotterer / Juichi Wakisaka | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 2:08.7550 |
| 6th | 35 | Tatsuya Kataoka / Peter Dumbreck | Lexus SC430 (UZZ40) | Toyota Team Kraft | 2:08.9170 |
| 7th | 23 | Benoit Tréluyer / Satoshi Motoyama / Fabio Carbone | Nissan GT-R | Nismo | 2:08.9840 |
| 8th | 6 | Akira Iida / Roberto Streit / Björn Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 2:09.0460 |
| 9th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Dome Racing Team | 2:09.1120 |
| 10th | 32 | Loïc Duval / Katsuyuki Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 2:10.2410 |
| 11th | 100 | Yuuji Ide / Shin'ya Hosokawa / Kousuke Matsuura | Honda NSX (LA-NA2) | Team Kunimitsu | 2:07.4740 |
| 12th | 39 | André Couto / Toranosuke Takagi / Kouki Saga | Lexus SC430 (UZZ40) | Toyota Team Sard | 2:10.3590 |
| 13th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R | Kondo Racing | 2:11.5140 |
| 14th | 25 | Takeshi Tsuchiya / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 2:11.9610 |
| 15th | 3 | Ronnie Quintarelli / Naoki Yokomizo | Nissan GT-R | Hasemi Motorsport | 2:12.0580 |
| 16th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 2:09.1440 |
| 17th | 77 | Kota Sasaki / Tetsuya Yamano | Subaru Impreza (GD) | Cusco Racing | 2:22.4320 |
| 18th | 43 | Shinichi Takagi / Morio Nitta / Kyousuke Mineo | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:23.2710 |
| 19th | 95 | Kazuya Oshima / Keisuke Kunimoto / Yuuya Sakamoto | Toyota MR-S (GH-ZZW30) | Apr | 2:23.5830 |
| 20th | 2 | Hiroki Katou / Kazuho Takahashi / Hiroki Yoshimoto | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:23.9190 |
| 21st | 46 | Kazuki Hoshino / Hironobu Yasuda | Nissan Fairlady Z (Z33) | Mola | 2:24.0640 |
| 22nd | 19 | Manabu Orido / Tsubasa Abe / Yuuhi Sekiguchi | Lexus IS350 (GSE21) | Racing Project Bandoh | 2:24.4180 |
| 23rd | 81 | Tomonobu Fujii / Takayuki Aoki | Nissan Fairlady Z (Z33) | Team Daishin | 2:24.9200 |
| 24th | 66 | Kouji Yamanishi / Atsushi Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:25.1580 |
| 25th | 11 | Tetsuya Tanaka / Masayuki Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 2:25.5750 |
| 26th | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 2:25.8200 |
| 27th | 4 | Ryohei Sakaguchi / Masaki Matsushita / Tadao Uematsu | Vemac RD320R | Team Uematsu Nova | 2:25.9890 |
| 28th | 26 | Nobuteru Taniguchi / Shin'ichi Yamaji / Keita Sawa | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 2:26.1660 |
| 29th | 7 | Hiroyuki Iiri / Ryou Orime / Hiroyuki Matsumura | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:26.3970 |
| 30th | 52 | Takuya Kurosawa / Takuto Iguchi / Hideki Yamauchi | Lexus IS350 (GSE21) | Team Takeuchi With Shift | 2:27.6520 |
| 31st | 62 | Haruki Kurosawa / Shinsuke Shibahara / Shogo Mitsuyama | Vemac RD408R | Willcom R&D Sport | 2:28.2090 |
| 32nd | 87 | Hisashi Wada / Muneyuki Kurihara / Yoshihisa Namekata | Lamborghini Gallardo RG-3 | JLOC | 2:28.2190 |
| 33rd | 118 | Masaki Jounai / Takshi Miyamoto / Masayuki Kurihara | Porsche 996 GT3-RS | Tomei Sports | 2:28.6990 |
| 34th | 5 | Tetsuji Tamanaka / Naoya Yamano / Katsuhiko Tsutsui | Vemac RD320R | Team Mach | 2:29.6060 |
| 35th | 111 | Tsubasa Kurosawa / Hiroshi Koizumi | Porsche 986 Boxster | Arktech Motorsports | 2:30.1950 |
| 36th | 170 | Yutaka Yamagishi / Yoshimi Ishibashi / Kazuyoshi Takamizawa | Porsche 996 GT3-RS | Team Gaikokuya | 2:31.4400 |
| 37th | 88 | Hideshi Matsuda / Naohiro Furuya / Yuuya Sakamoto | Lamborghini Gallardo RG-3 | JLOC | 2:27.1070 |
| 38th | 666 | Syougo Suhou / Jun'ichirou Yamashita / "Takamori.com" | Vemac RD320R | Avanzza Rosso | 2:30.8960 |
| 39th | 9 | Tatsuya Tanigawa / Hirofumi Takei / Takayuki Matsumoto | Chevrolet Corvette C6 (GH-X245) | A&S Racing | 2:40.2810 |
| 40th | 110 | Hidetoshi Mitsusada / Daisuke Ikeda | Porsche 986 Boxster | Arktech Motorsports | 2:42.3170 |
| 41st | 27 | Takashi Inoue / Hwang Jin-Woo / Yasuhiro Takasaki | Porsche 996 GT3-RSR | Team Shadow | no time |
| 42nd | 808 | Yasushi Kikuchi / Syouzou Tagahara | BMW Z4 M Coupe (S62) | Studie & Glad With Asada Racing | no time |