| 1st | 1 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:53.9950 |
| 2nd | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:53.8910 |
| 3rd | 3 | Ronnie Quintarelli / Hironobu Yasuda | Nissan GT-R (R35) | Hasemi Motor Sport | 1:54.3310 |
| 4th | 36 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:54.0490 |
| 5th | 12 | Tsugio Matsuda / Sébastien Philippe | Nissan GT-R (R35) | Team Impul | 1:54.2110 |
| 6th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda NSX (LA-NA2) | Keihin Real Racing | 1:54.2600 |
| 7th | 100 | Yuuji Ide / Shin'ya Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:54.5220 |
| 8th | 18 | Ryou Michigami / Takashi Kogure | Honda NSX (LA-NA2) | Team Yoshiki & Dome Project | 1:54.6030 |
| 9th | 32 | Loïc Duval / Yuuki Nakayama | Honda NSX (LA-NA2) | Nakajima Racing | 1:54.7060 |
| 10th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:54.7500 |
| 11th | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:54.9450 |
| 12th | 24 | Joao Paolo de Oliveira / Seiji Ara | Nissan GT-R (R35) | Kondo Racing | 1:55.1290 |
| 13th | 8 | Ralph Firman / Takuya Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:55.2180 |
| 14th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:55.6640 |
| 15th | 33 | Mitsuhiro Kinoshita / Masami Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 2:04.2060 |
| 16th | 81 | Takayuki Aoki / Tomonobu Fujii | Ferrari F430 | Team Daishin | 2:06.2830 |
| 17th | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE-Amemiya Racing | 2:06.5700 |
| 18th | 2 | Hiroki Katou / Hiroki Yoshimoto | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:05.0940 |
| 19th | 46 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Team Nishizawa Mola | 2:05.9570 |
| 20th | 43 | Morio Nitta / Shinichi Takagi | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:06.8690 |
| 21st | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 (F430SC) | Jim Gainer | 2:06.3180 |
| 22nd | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 2:06.4370 |
| 23rd | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 2:07.2660 |
| 24th | 88 | Hideshi Matsuda / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:07.5220 |
| 25th | 26 | Haruki Kurosawa / Tsubasa Abe | Porsche 996 GT3-RS | Team Taisan | 2:08.0010 |
| 26th | 30 | Kota Sasaki / Naoya Yamano | Lexus IS350 (GSE21) | Team Reckless With Shift | 2:08.3540 |
| 27th | 31 | Yuuya Sakamoto / Hideki Yamauchi | Toyota Corolla Axio (NZE141) | Apr | 2:08.4020 |
| 28th | 5 | Tetsuji Tamanaka / "Akazame Oyaji" | Vemac RD320R Porsche | Team Mach | 2:08.7450 |
| 29th | 55 | Yutaka Yamagishi / Hiroshi Koizumi | Porsche 996 GT3-RSR | Tomei Sports | 2:09.5120 |
| 30th | 111 | Takaya Tsubobayashi / Daisuke Ikeda | Porsche 996 GT3-RSR | Arktech Motorsports | 2:10.0280 |
| 31st | 666 | Syougo Suhou / Jun'ichirou Yamashita | Vemac RD320R | Avanzza Rosso | 2:10.3720 |
| 32nd | 10 | Masayuki Ueda / Masataka Kawaguchi | Ferrari 360 Modena (GF-F360) | Jim Gainer | 2:10.6910 |
| 33rd | 87 | Hiroyuki Iiri / Hisashi Wada | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:10.9380 |
| 34th | 110 | Tatsuya Tanigawa / Kim Han Bong | Porsche 986 Boxster | Arktech Motorsports | 2:08.8660 |
| 35th | 66 | Kouji Yamanishi / Atsushi Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | no time |
| 36th | 808 | Yasushi Kikuchi / Syouzou Tagahara | BMW Z4 M Coupe (E86) | Studie Glad Racing | no time |