| 1st | 8 | Ralph Firman / Yuuji Ide / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:55.2370 |
| 2nd | 23 | Satoshi Motoyama / Benoit Tréluyer | Nissan GT-R (R35) | Nismo | 1:55.4110 |
| 3rd | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:55.7190 |
| 4th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:56.1490 |
| 5th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:56.3200 |
| 6th | 39 | André Couto / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:58.2930 |
| 7th | 35 | Kazuya Oshima / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:56.8850 |
| 8th | 38 | Yuuji Tachikawa / Richard Lyons | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:57.1880 |
| 9th | 6 | Daisuke Itou / Björn Wirdheim | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:57.0420 |
| 10th | 1 | Juichi Wakisaka / Andre Lotterer | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:57.2990 |
| 11th | 12 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | Team Impul | 1:59.3680 |
| 12th | 24 | Joao Paolo de Oliveira / Hironobu Yasuda | Nissan GT-R (R35) | Kondo Racing | 1:58.5620 |
| 13th | 18 | Loïc Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:57.0940 |
| 15th | 26 | Igor Sushko / Masayuki Ueda / Shogo Mitsuyama | Porsche 996 GT3-R | Team Taisan | 2:07.4980 |
| 16th | 74 | Takuto Iguchi / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 2:08.5000 |
| 17th | 43 | Morio Nitta / Shinichi Takagi / Kyousuke Mineo | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:08.5810 |
| 18th | 9 | Taku Bamba / Masahiro Sasaki / Mitsuhiro Kinoshita | Porsche 997 GT3 R | Good Smile Racing With Cox | 2:09.2020 |
| 19th | 2 | Hiroki Katou / Hiroshi Hamaguchi / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:09.3170 |
| 20th | 27 | Yutaka Yamagishi / Hiroshi Koizumi | Ferrari F430 GTC | LMP Motorsport | 2:09.3870 |
| 21st | 25 | Akihiro Tsuduki / Takeshi Tsuchiya / Yoshio Tsuduki | Porsche 997 GT3 RSR | Samurai Team Tsuchiya | 2:09.5680 |
| 22nd | 5 | Tetsuji Tamanaka / Haruki Kurosawa | Vemac RD408R | Team Mach | 2:09.6550 |
| 23rd | 31 | Kouki Saga / Kousuke Matsuura / Yuuya Sakamoto | Toyota Corolla Axio (NZE141) | Apr | 2:09.6600 |
| 24th | 3 | Kazuki Hoshino / Masataka Yanagida | Nissan Fairlady Z (Z33) | Hasemi Motor Sport | 2:10.2930 |
| 25th | 62 | Tetsuya Yamano / Kota Sasaki | Subaru Legacy B4 (BM9) | R&D Sport | 2:09.2930 |
| 26th | 88 | Atsushi Yogou / Shin'ya Hosokawa | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:09.3130 |
| 27th | 86 | Kouji Yamanishi / Yuuhi Sekiguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:09.0310 |
| 28th | 46 | Naoki Yokomizo / Tsubasa Abe | Nissan Fairlady Z (Z33) | Mola | 2:09.6580 |
| 29th | 87 | Hiroyuki Iiri / Yuuya Sakamoto / Naohiro Furuya | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:09.7210 |
| 30th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka | Ferrari F430 | Jim Gainer | 2:09.3770 |
| 31st | 365 | Melvin Choo / Shinsuke Yamazaki / Keita Sawa | Mosler MT900M | 365 Thunder Asia Racing | 2:10.1920 |
| 32nd | 66 | Hideshi Matsuda / Hiroki Yoshimoto / Tomonobu Fujii | Aston Martin V8 Vantage GT2 | A Speed | 2:10.3410 |
| 33rd | 7 | Nobuteru Taniguchi / Ryou Orime | Mazda RX-7 (FD3S) | M7 RE Amemiya Racing | 2:09.8740 |
| 34th | 19 | Manabu Orido / Tatsuya Kataoka | Lexus IS350 (GSE21) | Racing Project Bandoh | 2:10.4340 |
| 35th | 28 | Yuuki Iwasaki / Akihiko Asai | Porsche 996 GT3-RSR | LMP Motorsport | 2:11.2200 |
| 36th | 22 | Hisashi Wada / Masaki Jounai / Ryohei Sakaguchi | Vemac RD350R | RQ's Motorsports | 2:12.9050 |
| 37th | 666 | Jun'ichirou Yamashita / "Takamori.com" / Satoshi Kimura | Porsche 986 Boxster | Bomex Rosso | 2:15.5430 |