| 1st | 46 | Ronnie Quintarelli / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:54.3230 |
| 2nd | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:54.2860 |
| 3rd | 1 | Loïc Duval / Takashi Kogure | Honda HSV-010 GT (H010) | weider Honda Racing | 1:53.9910 |
| 4th | 12 | Joao Paolo de Oliveira / Tsugio Matsuda | Nissan GT-R (R35) | Team Impul | 1:54.5260 |
| 5th | 23 | Benoit Tréluyer / Satoshi Motoyama | Nissan GT-R (R35) | Nismo | 1:54.6890 |
| 6th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:54.8200 |
| 7th | 39 | Takuto Iguchi / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:54.0620 |
| 8th | 36 | Andre Lotterer / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:54.8380 |
| 9th | 6 | Kazuya Oshima / Daisuke Itou | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:54.9490 |
| 10th | 35 | Juichi Wakisaka / André Couto | Lexus SC430 (UZZ40) | Lexus Team Kraft | 1:54.5370 |
| 11th | 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:54.3520 |
| 12th | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:55.0000 |
| 13th | 8 | Hideki Mutou / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:55.2710 |
| 14th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:55.2920 |
| 15th | 19 | Tatsuya Kataoka / Seiji Ara | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | 1:56.1100 |
| 17th | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:08.0600 |
| 18th | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:07.6710 |
| 19th | 62 | Kota Sasaki / Tetsuya Yamano | Subaru Legacy B4 (BM9) | R&D Sport | 2:07.2220 |
| 20th | 14 | Ryou Orime / Alexandre Imperatori | Lexus IS350 (GSE21) | Team SG Changi | 2:07.3530 |
| 21st | 25 | Takeshi Tsuchiya / Akihiro Tsuduki | Porsche 997 GT3 RSR | Samurai Team Tsuchiya | 2:07.9710 |
| 22nd | 4 | Nobuteru Taniguchi / Taku Bamba | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:06.8870 |
| 23rd | 87 | Manabu Orido / Atsushi Yogou | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:07.0600 |
| 24th | 88 | Yuuhi Sekiguchi / Hiroyuki Iiri | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:06.9520 |
| 25th | 27 | Hideki Yamauchi / Yutaka Yamagishi | Ferrari F430 GTC | LMP Motorsport | 2:07.8920 |
| 26th | 86 | Takayuki Aoki / Yuuya Sakamoto | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:07.4220 |
| 27th | 2 | Hiroki Katou / Kazuho Takahashi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:06.8730 |
| 28th | 26 | Kyousuke Mineo / Jun'ichirou Yamashita / Shogo Mitsuyama | Porsche 996 GT3-R | Team Taisan Cinecitta | 2:07.9660 |
| 29th | 11 | Katsuyuki Hiranaka / Tetsuya Tanaka | Ferrari 458 GTC | Jim Gainer | 2:07.8170 |
| 30th | 66 | Hiroki Yoshimoto / Kazuki Hoshino | Aston Martin V8 Vantage GT2 | A Speed | 2:08.0860 |
| 31st | 34 | Hiroshi Takamori / Michael Kim / Naoya Gamou | Porsche 997 GT3 RSR | Hankook KTR | 2:07.9200 |
| 32nd | 74 | Morio Nitta / Yuuji Kunimoto | Toyota Corolla Axio (NZE141) | Apr | 2:07.6840 |
| 33rd | 31 | Yuuki Iwasaki / Kouki Saga | Toyota Corolla Axio (NZE141) | Apr | 2:08.1610 |
| 34th | 41 | Shin'ichi Yamaji / Hiroshi Koizumi | Ferrari F430 GT | Team Taisan Cinecitta | 2:08.2380 |
| 35th | 15 | Tim Bergmeister / Yasuhiro Shimizu | Porsche 997 GT3 R | Team Art Taste | 2:09.4970 |
| 36th | 5 | Haruki Kurosawa / Tetsuji Tamanaka | Vemac RD320R | Team Mach | 2:09.6530 |
| 37th | 22 | Masaki Jounai / Hisashi Wada | Vemac RD350R | R'Qs Motorsports | 2:10.0010 |
| 38th | 69 | Naoki Yokomizo / Melvin Choo / Hiroki Yoshida | Mosler MT900M | Thunder Asia Racing | 2:07.8870 |
| 39th | 7 | Carlo van Dam / Akira Mizutani / Yuu Yokomaku | Porsche 997 GT3 R | Direction Racing | 2:07.8970 |