| 1st | 1 | Masataka Yanagida / Ronnie Quintarelli | Nissan GT-R (R35) | Mola | 1:51.5540 |
| 2nd | 39 | Juichi Wakisaka / Hiroaki Ishiura | Lexus SC430 (UZZ40) | Lexus Team Sard | 1:51.8750 |
| 3rd | 6 | Daisuke Itou / Kazuya Oshima | Lexus SC430 (UZZ40) | Lexus Team Le Mans Eneos | 1:51.9510 |
| 4th | 23 | Satoshi Motoyama / Michael Krumm | Nissan GT-R (R35) | Nismo | 1:51.9750 |
| 5th | 12 | Tsugio Matsuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:52.3370 |
| 6th | 17 | Toshihiro Kaneishi / Koudai Tsukakoshi | Honda HSV-010 GT (H010) | Keihin Real Racing | 1:52.3810 |
| 7th | 36 | Loïc Duval / Kazuki Nakajima | Lexus SC430 (UZZ40) | Lexus Team Petronas Tom's | 1:52.5290 |
| 8th | 38 | Yuuji Tachikawa / Kouhei Hirate | Lexus SC430 (UZZ40) | Lexus Team Zent Cerumo | 1:53.5820 |
| 9th | 35 | Yuuji Kunimoto / Andrea Caldarelli | Lexus SC430 (UZZ40) | Lexus Team KeePer Kraft | 1:52.6100 |
| 10th | 18 | Takashi Kogure / Carlo van Dam | Honda HSV-010 GT (H010) | Weider Honda Racing | 1:54.2430 |
| 11th | 24 | Hironobu Yasuda / Björn Wirdheim | Nissan GT-R (R35) | Kondo Racing | 1:53.2970 |
| 12th | 8 | Ralph Firman / Takashi Kobayashi | Honda HSV-010 GT (H010) | Autobacs Racing Team Aguri | 1:54.6480 |
| 13th | 32 | Ryou Michigami / Yuuki Nakayama | Honda HSV-010 GT (H010) | Nakajima Racing | 1:54.7110 |
| 14th | 100 | Takuya Izawa / Naoki Yamamoto | Honda HSV-010 GT (H010) | Team Kunimitsu | 1:54.7640 |
| 15th | 19 | Seiji Ara / André Couto | Lexus SC430 (UZZ40) | Lexus Team WedsSport Bandoh | no time |
| 17th | 16 | Hideki Mutou / Daisuke Nakajima | Honda CR-Z | Team Mugen | 2:02.1300 |
| 18th | 3 | Yuuhi Sekiguchi / Katsumasa Chiyo / Daiki Sasaki | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 2:02.8850 |
| 19th | 0 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:02.9870 |
| 20th | 61 | Tetsuya Yamano / Kota Sasaki | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 2:03.1750 |
| 21st | 88 | Manabu Orido / Takayuki Aoki / Keita Sawa | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:03.2870 |
| 22nd | 87 | Kouji Yamanishi / Hideki Yamauchi | Lamborghini Gallardo LP600+ GT3 (09-7) | JLOC | 2:03.5490 |
| 23rd | 911 | Kyousuke Mineo / Naoki Yokomizo | Porsche 997 GT3 R | Team Taisan Endless | 2:04.0920 |
| 24th | 33 | Masami Kageyama / Tomonobu Fujii | Porsche 997 GT3 R | Hankook KTR | 2:03.1900 |
| 25th | 2 | Kazuho Takahashi / Hiroki Katou / Hiroshi Hamaguchi | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:03.6550 |
| 26th | 4 | Taku Bamba / Masahiro Sasaki | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 2:04.5020 |
| 27th | 31 | Morio Nitta / Kouki Saga / Yuichi Nakayama | Toyota Prius (ZVW30) | Apr | 2:04.3510 |
| 28th | 52 | Hironori Takeuchi / Haruki Kurosawa / Akihiko Nakaya | Mercedes-Benz SLS AMG GT3 | Green Tec & Leon With Shift | 2:04.1380 |
| 29th | 11 | Tetsuya Tanaka / Katsuyuki Hiranaka / Atsushi Yogou | Audi R8 LMS ultra (AS42AOFGT3) | Gainer | 2:05.0700 |
| 30th | 43 | Shinichi Takagi / Kousuke Matsuura | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:04.9970 |
| 31st | 48 | Hiroshi Takamori / Shogo Mitsuyama / Keiichi Inoue | Callaway Corvette Z06R GT3 | Dijon Racing | 2:04.8340 |
| 32nd | 14 | Ryou Orime / Alexandre Imperatori | Lexus IS350 (GSE21) | Team SGC | 2:05.4270 |
| 33rd | 21 | Akihiro Tsuduki / Cyndie Allemann / Richard Lyons | Audi R8 LMS | Hitotsuyama Racing | 2:05.5660 |
| 34th | 30 | Yuuki Iwasaki / Yuuya Sakamoto / Kenji Kobayashi | Audi R8 LMS ultra (ABA-42BYHF) | Apr | 2:05.6830 |
| 35th | 5 | Tetsuji Tamanaka / Masayuki Ueda | Ferrari 458 Italia GT3 | Team Mach | 2:05.8180 |
| 36th | 99 | Michael Kim / Hideto Yasuoka / Yoshio Tsuduki | Audi R8 LMS | Hitotsuyama Racing | 2:06.0010 |
| 37th | 27 | Yutaka Yamagishi / Takuto Iguchi | Ferrari F430 GTC | LMP Motorsport | 2:06.7620 |
| 38th | 22 | Hisashi Wada / Masaki Jounai | Vemac RD350R | R'Qs Motorsports | 2:07.6520 |
| 39th | 85 | Yuuya Sakamoto / Ryohei Sakaguchi | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:07.8610 |
| 40th | 86 | Jun'ichirou Yamashita / Hideshi Matsuda | Lamborghini Gallardo RG-3 (ZHWGE) | JLOC | 2:08.3260 |
| 41st | 66 | Hiroki Yoshimoto / Kazuki Hoshino / Hiroki Yoshida | Aston Martin V12 Vantage GT3 | A Speed | 2:02.0780 |