| 1st | 24 | Daiki Sasaki / Joao Paolo de Oliveira | Nissan GT-R Nismo GT500 (R35) | Kondo Racing | 1:47.0740 |
| 2nd | 19 | Yuuhi Sekiguchi / Yuuji Kunimoto / Kamui Kobayashi | Lexus LC500 (URZ100) | Lexus Team WedsSport Bandoh | 1:47.2690 |
| 3rd | 17 | Koudai Tsukakoshi / Takashi Kogure | Honda NSX-GT (NC1) | Keihin Real Racing | 1:47.6480 |
| 4th | 64 | Kousuke Matsuura / Bertrand Baguette | Honda NSX-GT (NC1) | Nakajima Racing | 1:47.8120 |
| 5th | 46 | Satoshi Motoyama / Katsumasa Chiyo | Nissan GT-R Nismo GT500 (R35) | Mola | 1:47.5880 |
| 6th | 100 | Naoki Yamamoto / Takuya Izawa | Honda NSX-GT (NC1) | Team Kunimitsu | 1:47.5760 |
| 7th | 12 | Hironobu Yasuda / Jann Mardenborough | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:48.2440 |
| 8th | 37 | Ryō Hirakawa / Nick Cassidy | Lexus LC500 (URZ100) | Lexus Team KeePer Tom's | 1:48.1960 |
| 9th | 16 | Hideki Mutou / Daisuke Nakajima / Jenson Button | Honda NSX-GT (NC1) | Team Mugen | 1:48.5880 |
| 10th | 36 | Kazuki Nakajima / James Rossiter | Lexus LC500 (URZ100) | Lexus Team au Tom's | 1:48.8250 |
| 11th | 6 | Kazuya Oshima / Andrea Caldarelli | Lexus LC500 (URZ100) | Lexus Team Le Mans Wako's | 1:49.0020 |
| 12th | 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R Nismo GT500 (R35) | NISMO | 1:49.1460 |
| 13th | 38 | Yuuji Tachikawa / Hiroaki Ishiura | Lexus LC500 (URZ100) | Lexus Team Zent Cerumo | 1:49.1960 |
| 14th | 1 | Heikki Kovalainen / Kouhei Hirate | Lexus LC500 (URZ100) | Lexus Team SARD | 1:49.2290 |
| 15th | 8 | Tomoki Nojiri / Takashi Kobayashi | Honda NSX-GT (NC1) | Autobacs Racing Team Aguri | 1:50.1200 |
| 17th | 25 | Takamitsu Matsui / Kenta Yamashita / Tsubasa Kondo | Toyota 86 MC (ZN6) | Vivac Team Tsuchiya | 1:57.5430 |
| 18th | 18 | Yuuki Nakayama / Shintarou Kawabata | Toyota 86 MC (ZN6) | Team Upgarage With Bandoh | 1:58.0000 |
| 19th | 5 | Natsu Sakaguchi / Kiyoto Fujinami / Tetsuji Tamanaka | Toyota 86 MC (ZN6) | Team Mach | 1:58.1460 |
| 20th | 4 | Nobuteru Taniguchi / Tatsuya Kataoka | Mercedes-AMG GT3 (C190) | Goodsmile Racing & Team Ukyo | 1:58.2350 |
| 21st | 51 | Yuichi Nakayama / Syou Tsuboi | Lexus RC F GT3 (USC10) | LM Corsa | 1:58.5810 |
| 22nd | 60 | Akira Iida / Hiroki Yoshimoto | Lexus RC F GT3 (USC10) | LM Corsa | 1:58.7420 |
| 23rd | 10 | Ryuichiro Tomita / Hiroki Yoshida | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.7740 |
| 24th | 61 | Takuto Iguchi / Hideki Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:58.8160 |
| 25th | 65 | Haruki Kurosawa / Naoya Gamou | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:58.9670 |
| 26th | 33 | Tomonobu Fujii / Sven Müller | Porsche 991 GT3 R | D'station Racing | 1:59.1750 |
| 27th | 88 | Manabu Orido / Kazuki Hiramine / Kouji Yamanishi | Lamborghini Huracán GT3 | JLOC | 1:59.1700 |
| 28th | 50 | Akihiro Tsuduki / Morio Nitta | Ferrari 488 GT3 (F142M) | Inging & Arnage Racing | 1:59.5560 |
| 29th | 21 | Richard Lyons / Masataka Yanagida | Audi R8 LMS (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:59.5170 |
| 30th | 30 | Hiroaki Nagai / Kota Sasaki | Toyota Prius (ZVW51) | Apr | 1:59.3360 |
| 31st | 31 | Kouki Saga / Rintaro Kubo | Toyota Prius (ZVW51) | Apr | 1:59.5860 |
| 32nd | 3 | Kazuki Hoshino / Mitsunori Takaboshi | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:59.6140 |
| 33rd | 2 | Kazuho Takahashi / Hiroki Katou / Hiroshi Hamaguchi | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:59.6700 |
| 34th | 9 | Jono Lester / Kyousuke Mineo | Porsche 991 GT3 R | Pacific with Gulf Racing | 1:59.7810 |
| 35th | 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-AMG GT3 (C190) | Gainer | 1:59.9390 |
| 36th | 87 | Shin'ya Hosokawa / Kimiya Satou / Yuya Motojima | Lamborghini Huracán GT3 | JLOC | 1:59.9920 |
| 37th | 52 | Taku Bamba / Shigekazu Wakisaka / Shogo Mitsuyama | Toyota Mark X MC (GRX133) | Saitama Toyopet Green Brave | 2:00.0180 |
| 38th | 111 | Keishi Ishikawa / Ryousei Yamashita / Masayuki Ueda | Mercedes-AMG GT3 (C190) | Rn-sports | 2:00.0220 |
| 39th | 55 | Shinichi Takagi / Sean Walkinshaw | BMW M6 GT3 (F13) | Autobacs Racing Team Aguri | 2:00.0440 |
| 40th | 26 | Shin'nosuke Yamada / Jake Parsons / Christian Klien | Audi R8 LMS (AS4FAFG3) | Team Taisan SARD | 2:00.2330 |
| 41st | 7 | Augusto Farfus / Seiji Ara / Jörg Müller | BMW M6 GT3 (F13) | BMW Team Studie | 2:00.2920 |
| 42nd | 117 | Yuuji Ide / Ryohei Sakaguchi | Bentley Continental GT3 (BGT3 01) | EIcars Bentley TTO | 2:01.1100 |
| 43rd | 360 | Yuusaku Shibata / Atsushi Tanaka / Takayuki Aoki | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:01.2930 |
| 44th | 48 | Hiroshi Takamori / Masaki Tanaka / Masami Kageyama | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 2:01.6530 |
| 45th | 22 | Hisashi Wada / Masaki Jounai | Mercedes-Benz SLS AMG GT3 | R'Qs Motor Sports | 2:01.8690 |
| 46th | 35 | Nattavude Charoensukhawatana / Nattapong Hortongkum | Toyota 86 MC (ZN6) | Panther Team Thailand | 2:03.6770 |