| 1st | 7 | Lotterer / Fässler / Tréluyer | Audi R18 | Audi Sport Team Joest | 1:45.703 | 1:45.7030 | 1:47.1580 | 1:47.3300 | 1:46.2920 |
| 2nd | 8 | di Grassi / Duval / Jarvis | Audi R18 | Audi Sport Team Joest | 1:45.719 | 1:45.8850 | 1:47.0520 | 1:47.2350 | 1:45.7190 |
| 3rd | 1 | Bernhard / Webber / Hartley | Porsche 919 Hybrid | Porsche Team | 1:46.051 | 1:46.5270 | 1:48.2180 | 1:47.9590 | 1:46.0510 |
| 4th | 2 | Dumas / Jani / Lieb | Porsche 919 Hybrid | Porsche Team | 1:46.071 | 1:46.0710 | 1:48.6360 | 1:48.1300 | 1:46.0800 |
| 5th | 5 | Davidson / Buemi / Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:46.883 | 1:47.0770 | 1:48.4820 | 1:48.1340 | 1:46.8830 |
| 6th | 6 | Sarrazin / Conway / Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:46.953 | 1:46.9530 | 1:48.5440 | 1:49.3610 | 1:47.3470 |
| 7th | 13 | Tuscher / Kraihamer / Imperatori | Rebellion R-One AER | Rebellion Racing | 1:52.538 | 1:53.6420 | 1:54.9180 | 1:54.4790 | 1:52.5380 |
| 8th | 4 | Trummer / Webb | CLM P1/01 AER | Bykolles Racing Team | 1:54.069 | 1:54.0690 | 1:55.8890 | 1:54.3610 | 1:54.2700 |
| 9th | 36 | Menezes / Lapierre / Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:55.645 | 1:55.6450 | 1:57.2510 | 1:56.3180 | 1:56.2690 |
| 10th | 44 | Rao / Bradley / Merhi | Oreca 05 Nissan | Manor | 1:55.696 | 1:56.1950 | 1:57.8160 | 1:57.6470 | 1:55.6960 |
| 11th | 43 | Gonzalez / Albuquerque / Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:55.741 | 1:55.7540 | 1:57.4540 | 1:56.5340 | 1:55.7410 |
| 12th | 26 | Rusinov / Rast / Brundle | Oreca 05 Nissan | G-Drive Racing | 1:55.958 | 1:57.2080 | 1:57.0350 | 1:56.9930 | 1:55.9580 |
| 13th | 42 | Leventis / Williamson / Kane | Gibson 015S Nissan | Strakka Racing | 1:56.405 | 1:57.1580 | 1:58.1980 | 1:57.8590 | 1:56.4050 |
| 14th | 35 | Cheng / Panciatici / Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:56.687 | 1:56.6870 | 1:58.1940 | 1:57.6130 | 1:56.7700 |
| 15th | 31 | Dalziel / Derani / Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:56.759 | 1:56.7590 | 1:58.9140 | 1:58.0200 | 1:56.8550 |
| 16th | 30 | Sharp / Brown / Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:56.902 | 1:57.2270 | 1:59.3160 | 1:58.7550 | 1:56.9020 |
| 17th | 27 | Minassian / Mediani | BR01 Nissan | SMP Racing | 1:57.249 | 1:58.4610 | 1:59.6340 | 1:58.8580 | 1:57.2490 |
| 18th | 37 | Petrov / Ladygin / Shaytar | BR01 Nissan | SMP Racing | 1:57.719 | 1:57.7190 | 1:59.9200 | 1:58.2420 | 1:57.8620 |
| 19th | 95 | Sørensen / Thiim | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:03.368 | 2:04.5790 | 2:05.4050 | 2:05.4960 | 2:03.3680 |
| 20th | 97 | Turner / Rees | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:04.173 | 2:04.6950 | 2:05.2860 | 2:05.8010 | 2:04.1730 |
| 21st | 51 | Bruni / Calado | Ferrari 488 GTE | AF Corse | 2:04.374 | 2:04.5250 | 2:05.6520 | 2:05.5600 | 2:04.3740 |
| 22nd | 67 | Franchitti / Priaulx / Tincknell | Ford GT | Ford Chip Ganassi Team UK | 2:04.452 | 2:04.9020 | 2:06.2760 | 2:05.6300 | 2:04.4520 |
| 23rd | 71 | Rigon / Bird | Ferrari 488 GTE | AF Corse | 2:04.528 | 2:04.5490 | 2:06.0580 | 2:05.8230 | 2:04.5280 |
| 24th | 66 | Mücke / Pla | Ford GT | Ford Chip Ganassi Team UK | 2:04.557 | 2:04.5570 | 2:05.2440 | 2:04.7140 | 2:04.6730 |
| 25th | 77 | Lietz / Christensen | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 2:05.186 | 2:05.5270 | 2:06.6710 | 2:06.4450 | 2:05.1860 |
| 26th | 88 | Al Qubaisi / Heinemeier Hansson / Estre | Porsche 991 RSR | Abu Dhabi-Proton Racing | 2:06.038 | 2:07.2820 | 2:07.7900 | 2:07.8310 | 2:06.0380 |
| 27th | 98 | Dalla Lana / Lamy / Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:06.092 | 2:06.9990 | 2:08.3400 | 2:06.0920 | 2:06.1990 |
| 28th | 50 | Viljoen / Ragues / Taylor | Chevrolet Corvette C7-Z06 | Larbre Competition | 2:06.476 | 2:06.9860 | 2:08.6260 | 2:07.4120 | 2:06.4760 |
| 29th | 86 | Wainwright / Carroll / Barker | Porsche 991 RSR | Gulf Racing | 2:06.791 | 2:07.0610 | 2:08.2670 | 2:07.7390 | 2:06.7910 |
| 30th | 83 | Perrodo / Collard / Aguas | Ferrari 458 Italia | AF Corse | 2:07.068 | 2:08.5750 | 2:09.7050 | 2:07.8040 | 2:07.0680 |
| 31st | 78 | Ried / Henzler / Camathias | Porsche 991 RSR | KCMG | 2:07.527 | 2:08.3620 | 2:07.5270 | 2:08.9750 | 2:08.6060 |