| 1st | 1 | Matsuda / Quintarelli | Nissan GT-R (R35) | NISMO | 1:27.552 | 1:27.5520 | 1:29.8220 | 1:29.3770 | 1:28.7510 |
| 2nd | 12 | Yasuda / de Oliveira | Nissan GT-R (R35) | Team Impul | 1:27.877 | 1:27.8770 | 1:29.8530 | 1:30.0210 | 1:29.0020 |
| 3rd | 38 | Tachikawa / Ishiura | Lexus RC F (USC10) | Lexus Team Zent Cerumo | 1:28.312 | 1:28.3120 | 1:30.8100 | 1:30.7730 | 1:29.3500 |
| 4th | 36 | Itou / Rossiter | Lexus RC F (USC10) | Lexus Team Petronas Tom's | 1:28.335 | 1:28.3350 | 1:29.7760 | 1:29.9720 | 1:28.8820 |
| 5th | 24 | Sasaki / Ordoñez | Nissan GT-R (R35) | Kondo Racing | 1:28.642 | 1:28.6420 | 1:31.1030 | 1:30.9060 | 1:29.9370 |
| 6th | 17 | Tsukakoshi / Mutou | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:28.672 | 1:28.6720 | 1:30.8000 | 1:31.0150 | 1:29.6640 |
| 7th | 39 | Hirate / Kovalainen | Lexus RC F (USC10) | Lexus Team Sard | 1:28.802 | 1:28.8020 | 1:30.7500 | 1:30.7230 | 1:29.3170 |
| 8th | 15 | Kogure / Turvey | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:28.921 | 1:28.9210 | 1:30.6640 | 1:30.8740 | 1:29.7150 |
| 9th | 46 | Motoyama / Yanagida | Nissan GT-R (R35) | Mola | 1:28.936 | 1:28.9730 | 1:30.2500 | 1:30.6970 | 1:28.9360 |
| 10th | 6 | Oshima / Kunimoto | Lexus RC F (USC10) | Lexus Team Le Mans Eneos | 1:29.050 | 1:29.0500 | 1:30.8500 | 1:30.5210 | 1:29.3230 |
| 11th | 100 | Yamamoto / Izawa | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:29.164 | 1:29.1640 | 1:30.8950 | 1:30.6340 | 22:37.2310 |
| 12th | 64 | Nakajima / Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:29.301 | 1:29.3010 | 1:30.8850 | 1:30.7180 | 1:29.8980 |
| 13th | 8 | Matsuura / Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:29.543 | 1:29.5430 | 1:30.8100 | 1:30.4720 | 1:29.6940 |
| 14th | 37 | Caldarelli / Hirakawa | Lexus RC F (USC10) | Lexus Team KeePer Tom's | 1:29.584 | 1:29.5840 | 1:31.2370 | 1:31.4240 | 1:29.7400 |
| 15th | 19 | Wakisaka / Sekiguchi | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:29.616 | 1:29.6160 | 1:31.0610 | 1:30.8530 | 1:30.2960 |
| 16th | 31 | Sasaki / Nakayama / Saga | Toyota Prius (ZVW30) | Apr | 1:36.519 | 1:36.5190 | 1:38.8390 | 1:38.0650 | 1:39.9450 |
| 17th | 3 | Hoshino / Takaboshi | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:37.028 | 1:37.0280 | 1:38.6380 | 1:38.2460 | 1:37.8560 |
| 18th | 10 | Couto / Chiyo / Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:37.242 | 1:37.2420 | 1:38.6880 | 1:38.6960 | 1:38.4620 |
| 19th | 11 | Hiranaka / Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 1:37.318 | 1:37.3180 | 1:39.1880 | 1:38.8150 | 1:38.2710 |
| 20th | 65 | Kurosawa / Gamou | Mercedes-Benz SLS AMG GT3 (197) | Leon Racing | 1:37.518 | 1:37.5180 | 1:39.4690 | 1:39.2990 | 1:38.2100 |
| 21st | 55 | Takagi / Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 1:37.711 | 1:37.7110 | 1:39.9940 | 1:41.9620 | 1:39.2650 |
| 22nd | 25 | Tsuchiya / Matsui | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:37.736 | 1:37.7360 | 1:39.6110 | 1:39.6930 | 1:38.6740 |
| 23rd | 0 | Taniguchi / Kataoka | Mercedes-Benz SLS AMG GT3 | Goodsmile Racing & TeamUkyo | 1:37.752 | 1:37.7520 | 1:39.4740 | 1:39.0140 | 1:38.6060 |
| 24th | 7 | Ara / Müller | BMW Z4 GT3 (E89) | BMW Sports Trophy Team Studie | 1:37.813 | 1:37.8130 | 1:39.3080 | 1:39.4560 | 1:38.5960 |
| 25th | 61 | Iguchi / Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:37.958 | 1:37.9580 | 1:39.2680 | 1:40.0700 | 1:38.4420 |
| 26th | 88 | Orido / Hiramine / Satou | Lamborghini Gallardo GT3 (22-12226) | JLOC | 1:38.050 | 1:38.0500 | 1:39.6900 | 1:39.9910 | 1:39.3890 |
| 27th | 21 | Lyons / Fujii / Ortelli | Audi R8 LMS Ultra | Audi Team Hitotsuyama | 1:38.056 | 1:38.2770 | 1:39.9530 | 1:38.8520 | 1:38.0560 |
| 28th | 360 | Yoshida / Tanaka / Narisawa | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:38.278 | 1:38.2780 | 1:40.0220 | 1:41.9050 | 1:38.9190 |
| 29th | 33 | Imperatori / Yamashita | Porsche 997 GT3 R | Porsche Team KTR | 1:38.379 | 1:38.3790 | 1:40.6680 | 1:40.3670 | 1:39.6330 |
| 30th | 18 | Nakayama / Asmer / Ide | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:38.467 | 1:38.4670 | 1:39.6380 | 1:39.9450 | 1:39.2940 |
| 31st | 77 | Yokomizo / Mineo / Iida | Ferrari 458 Italia GT3 | Direction Racing | 1:38.768 | 1:38.7680 | 1:40.0180 | 1:39.0070 | 1:38.7690 |
| 32nd | 30 | Koizumi / Iwasaki / Kageyama | Nissan GT-R Nismo GT3 (R35) | Apr | 1:38.770 | 1:38.7700 | 1:40.5520 | 1:39.6210 | 1:39.3080 |
| 33rd | 51 | Nitta / Wakisaka | BMW Z4 GT3 (E89) | LM Corsa | 1:38.791 | 1:38.7910 | 1:40.2460 | 1:40.3900 | 1:39.0790 |
| 34th | 2 | Takahashi / Katou | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:39.158 | no time | 1:41.7770 | no time | 1:39.1580 |
| 35th | 86 | Mamerow / Hosokawa / Kuroda | Audi R8 LMS Ultra | Audi Team Racing Tech | 1:39.246 | 1:40.8830 | 1:40.1440 | 1:40.8240 | 1:39.2460 |
| 36th | 9 | Shirasaka / Azuma / Yamawaki | McLaren MP4-12C GT3 | Pacific Racing | 1:39.295 | 1:39.2950 | 1:41.1660 | 1:41.1450 | 1:39.9010 |
| 37th | 5 | Tamanaka / Mitsuyama / Yamashita | Toyota 86 MC (86/ZN6) | Team Mach | 1:39.305 | 1:39.3050 | 1:40.9960 | 1:41.1840 | 1:39.6830 |
| 38th | 48 | Takamori / Tanaka / Shibata | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 1:39.362 | 1:39.3620 | 1:39.8080 | 1:40.9100 | 1:39.8700 |
| 39th | 50 | Kano / Indra-Payoong / Yasuoka | Mercedes-Benz SLS AMG GT3 (197) | Arnage Racing | 1:39.436 | 1:39.4360 | 1:40.7910 | 1:40.5960 | 1:40.6330 |
| 40th | 87 | Aoki / Yamanishi | Lamborghini Gallardo GT-3 (09-7) | JLOC | 1:39.458 | 1:39.4580 | | 1:40.8010 | 1:39.9040 |
| 41st | 111 | Ueda / Tsuruta / Ikegami | Mercedes-Benz SLS AMG GT3 | Rn-sports | 1:39.667 | 1:39.6670 | 1:40.9250 | 1:41.7040 | 1:40.7120 |
| 42nd | 60 | Iida / Yoshimoto | Lexus RC F GT3 (USC10) | LM Corsa | 1:40.135 | 1:40.1350 | 1:41.1650 | 1:41.8400 | 1:40.9010 |