| 1st | 7 | Kobayashi / Conway / Sarrazin / *Kunimoto / *Lapierre | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:18.132 | 3:18.1320 |
| 2nd | 8 | Buemi / Nakajima / Davidson / *Lopez / *Kunimoto | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:19.290 | 3:19.2900 |
| 3rd | 9 | Lopez / Lapierre / Kunimoto / *Conway / *Buemi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:21.455 | 3:21.4550 |
| 4th | 2 | Bamber / Bernhard / Hartley / Lieb | Porsche 919 Hybrid | Porsche LMP Team | 3:21.512 | 3:21.5120 |
| 5th | 1 | Jani / Lotterer / Tandy / Lieb | Porsche 919 Hybrid | Porsche LMP Team | 3:22.100 | 3:22.1000 |
| 6th | 35 | Negrão / Panciatici / Ragues | Alpine A470 Gibson | Signatech Alpine Matmut | 3:28.146 | 3:28.1460 |
| 7th | 4 | Kraihamer / Bonanomi / Webb | Enso CLM P1/01 Nismo | Bykolles Racing Team | 3:28.701 | 3:28.7010 |
| 8th | 24 | Vergne / Hirschi / Graves | Oreca 07 Gibson | CEFC Manor TRS Racing | 3:28.844 | 3:28.8440 |
| 9th | 37 | Brundle / Gommendy / Cheng | Oreca 07 Gibson | Jackie Chan DC Racing | 3:29.104 | 3:29.1040 |
| 10th | 26 | Lynn / Vanthoor / Rusinov / Thiriet | Oreca 07 Gibson | G-Drive Racing | 3:29.113 | 3:29.1130 |
| 11th | 38 | Tung / Jarvis / Laurent | Oreca 07 Gibson | Jackie Chan DC Racing | 3:29.924 | 3:29.9240 |
| 12th | 13 | Beche / Piquet, Jr. / Heinemeier Hansson | Oreca 07 Gibson | Vaillante Rebellion | 3:30.150 | 3:30.1500 |
| 13th | 28 | Catsburg / Collard / Perrodo / Vaxiviere | Oreca 07 Gibson | TDS Racing | 3:30.375 | 3:30.3750 |
| 14th | 36 | Dumas / Menezes / Rao | Alpine A470 Gibson | Signatech Alpine Matmut | 3:30.501 | 3:30.5010 |
| 15th | 40 | Bradley / Allen / Matelli | Oreca 07 Gibson | Graff | 3:30.525 | 3:30.5250 |
| 16th | 31 | Senna / Canal / Prost | Oreca 07 Gibson | Vaillante Rebellion | 3:30.535 | 3:30.5350 |
| 17th | 25 | Petrov / Trummer / Gonzalez | Oreca 07 Gibson | CEFC Manor TRS Racing | 3:30.570 | 3:30.5700 |
| 18th | 21 | Hanley / Rosenqvist / Hedman | Oreca 07 Gibson | Dragonspeed - 10 Star | 3:30.693 | 3:30.6930 |
| 19th | 22 | Hirakawa / Minassian / Rojas / Gutierrez | Oreca 07 Gibson | G-Drive Racing | 3:31.150 | 3:31.1500 |
| 20th | 32 | Albuquerque / de Sadeleer / Owen | Ligier JS P217 Gibson | United Autosports | 3:31.907 | 3:31.9070 |
| 21st | 47 | Belicchi / Sernagiotto / Lacorte | Dallara P217 Gibson | Cetilar Villorba Corse | 3:32.567 | 3:32.5670 |
| 22nd | 29 | Barrichello / Lammers / van Eerd | Dallara P217 Gibson | Racing Team Nederland | 3:33.304 | 3:33.3040 |
| 23rd | 23 | Berthon / Buret / Barthez / Gachet | Ligier JS P217 Gibson | Panis Barthez Competition | 3:33.690 | 3:33.6900 |
| 24th | 27 | Shaytar / Sirotkin / Mediani | Dallara P217 Gibson | SMP Racing | 3:33.787 | 3:33.7870 |
| 25th | 34 | Chandhok / Moore / Hanson | Ligier JS P217 Gibson | Tockwith Motorsports | 3:34.385 | 3:34.3850 |
| 26th | 39 | Guibbert / Trouillet / Winslow | Oreca 07 Gibson | Graff | 3:34.404 | 3:34.4040 |
| 27th | 17 | Chatin / Lafargue / Zollinger / Lafargue | Ligier JS P217 Gibson | Idec Sport Racing | 3:35.968 | 3:35.9680 |
| 28th | 45 | McMurry / Capillaire / Patterson / Koutsoumidis | Ligier JS P217 Gibson | Algarve Pro Racing | 3:36.544 | 3:36.5440 |
| 29th | 43 | Taylor / Bleekemolen / Keating / de Brujin | Riley Mk.30 Gibson | Keating Motorsports | 3:38.671 | 3:38.6710 |
| 30th | 49 | Calko / Breukers / Konôpka | Ligier JS P217 Gibson | ARC Bratislava | 3:38.905 | 3:38.9050 |
| 31st | 33 | Nicolet / Nicolet / Maris | Ligier JS P217 Gibson | Eurasia Motorsport | 3:43.817 | 3:43.8170 |
| 32nd | 64 | Gavin / Fässler / Milner | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:54.701 | 3:54.7010 |
| 33rd | 91 | Makowiecki / Pilet / Lietz / Vanthoor | Porsche 991 RSR | Porsche GT Team | 3:54.996 | 3:54.9960 |
| 34th | 92 | Estre / Christensen / Werner / *Vanthoor | Porsche 991 RSR | Porsche GT Team | 3:54.999 | 3:54.9990 |
| 35th | 63 | Garcia / Taylor / Magnussen | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:55.064 | 3:55.0640 |
| 36th | 95 | Sørensen / Thiim / Stanaway | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:55.251 | 3:55.2510 |
| 37th | 97 | Adam / Serra / Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:55.266 | 3:55.2660 |
| 38th | 71 | Rigon / Molina / Bird | Ferrari 488 GTE | AF Corse | 3:55.385 | 3:55.3850 |
| 39th | 51 | Calado / di Grassi / Pier Guidi | Ferrari 488 GTE | AF Corse | 3:55.827 | 3:55.8270 |
| 40th | 82 | Kaffer / Fisichella / Vilander | Ferrari 488 GTE | Risi Competizione | 3:55.847 | 3:55.8470 |
| 41st | 69 | Westbrook / Briscoe | Ford GT | Ford Chip Ganassi Team USA | 3:57.536 | 3:57.5360 |
| 42nd | 67 | Tincknell / Derani / Priaulx | Ford GT | Ford Chip Ganassi Team UK | 3:57.881 | 3:57.8810 |
| 43rd | 68 | Hand / Müller | Ford GT | Ford Chip Ganassi Team USA | 3:58.011 | 3:58.0110 |
| 44th | 66 | Johnson / Pla / Mücke | Ford GT | Ford Chip Ganassi Team UK | 3:58.181 | 3:58.1810 |
| 45th | 98 | Lamy / Lauda / Dalla Lana | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:58.250 | 3:58.2500 |
| 46th | 50 | Rees / Brandela / Philippon | Chevrolet Corvette C7.R | Larbre Competition | 3:58.302 | 3:58.3020 |
| 47th | 77 | Cairoli / Dienst / Ried / Piguet | Porsche 991 RSR | Dempsey - Proton Racing | 3:58.449 | 3:58.4490 |
| 48th | 62 | Bell / Sweedler / MacNeil | Ferrari 488 GTE | Scuderia Corsa | 3:58.599 | 3:58.5990 |
| 49th | 55 | Cioci / Cameron / Scott | Ferrari 488 GTE | Spirit of Race | 3:58.804 | 3:58.8040 |
| 50th | 99 | Gunn / Bryant / Howard | Aston Martin V8 Vantage GTE | Beechdean AMR | 3:58.885 | 3:58.8850 |
| 51st | 90 | Hankey / Yoluc | Aston Martin V8 Vantage GTE | TF Sport | 3:59.140 | 3:59.1400 |
| 52nd | 83 | Bertolini / Jönsson / Krohn | Ferrari 488 GTE | DH Racing | 3:59.174 | 3:59.1740 |
| 53rd | 61 | Sawa / Griffin / Mok | Ferrari 488 GTE | Clearwater Racing | 3:59.276 | 3:59.2760 |
| 54th | 88 | Bachler / Al Qubaisi / Lémeret / *Ried | Porsche 991 RSR | Proton Competition | 3:59.277 | 3:59.2770 |
| 55th | 86 | Barker / Foster / Wainwright | Porsche 991 RSR (2016) | Gulf Racing UK | 3:59.582 | 3:59.5820 |
| 56th | 65 | Balzan / Nielsen / Curtis | Ferrari 488 GTE | Scuderia Corsa | 4:00.120 | 4:00.1200 |
| 57th | 54 | Castellacci / Beretta / Flohr | Ferrari 488 GTE | Spirit of Race | 4:00.213 | 4:00.2130 |
| 58th | 84 | Cocker / Vanthoor / Stevens / Smith | Ferrari 488 GTE | JMW Motorsport | 4:00.523 | 4:00.5230 |
| 59th | 93 | Long / Al Faisal / Hedlund / *Ried / *Bachler | Porsche 991 RSR | Proton Competition | 4:00.556 | 4:00.5560 |
| 60th | 60 | Katou / Wee | Ferrari 488 GTE | Clearwater Racing | 4:05.248 | 4:05.2480 |