| 1st | 7 | Lotterer / Fässler | Audi R18 | Audi Sport Team Joest | 1:24.763 | 1:24.7630 | 1:26.0830 | 1:26.6880 | 1:25.5050 |
| 2nd | 8 | di Grassi / Duval / Jarvis | Audi R18 | Audi Sport Team Joest | 1:24.838 | 1:24.8380 | 1:25.9540 | 1:26.5200 | 1:25.6730 |
| 3rd | 2 | Dumas / Jani / Lieb | Porsche 919 Hybrid | Porsche Team | 1:25.045 | 1:25.0450 | 1:26.5310 | 1:25.8100 | 1:25.8470 |
| 4th | 1 | Bernhard / Webber / Hartley | Porsche 919 Hybrid | Porsche Team | 1:25.384 | 1:25.3840 | 1:25.8800 | 1:26.0580 | 1:25.3870 |
| 5th | 5 | Buemi / Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:25.891 | 1:25.8910 | 1:26.7670 | 1:26.7140 | 1:26.7880 |
| 6th | 6T | Sarrazin / Conway / Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:26.149 | 1:26.1490 | 1:26.5670 | | 1:26.4480 |
| 7th | 13 | Tuscher / Kraihamer / Imperatori | Rebellion R-One AER | Rebellion Racing | 1:29.877 | 1:29.8770 | 1:30.7100 | 1:30.9970 | 1:30.0530 |
| 8th | 4 | Kaffer / Trummer / Webb | CLM P1/01 AER | Bykolles Racing Team | 1:30.613 | 1:30.8910 | 1:32.1180 | 1:31.7210 | 1:30.6130 |
| 9th | 6 | Sarrazin / Conway / Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:30.790 | | | 1:30.7900 | |
| 10th | 43 | Gonzalez / Albuquerque / Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:34.688 | 1:34.6880 | 1:35.7020 | 1:35.5070 | 1:36.2330 |
| 11th | 26 | Rusinov / Rast / Brundle | Oreca 05 Nissan | G-Drive Racing | 1:35.456 | 1:35.4560 | 1:35.9250 | 1:35.5300 | 1:35.5550 |
| 12th | 36 | Menezes / Lapierre / Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:35.684 | 1:35.6840 | 1:36.0260 | 1:36.9080 | 1:36.0010 |
| 13th | 42 | Leventis / Williamson / Kane | Gibson 015S Nissan | Strakka Racing | 1:35.753 | 1:35.7530 | 1:36.9950 | 1:37.2240 | 1:36.0640 |
| 14th | 41 | Gonzalez / Junqueira / Diaz | Gibson 015S Nissan | Greaves Motorsport | 1:36.084 | 1:36.1660 | 1:37.0270 | 1:37.5340 | 1:36.0840 |
| 15th | 44 | Rao / Bradley / Guerra | Oreca 05 Nissan | Manor | 1:36.089 | 1:36.0890 | 1:36.1410 | 1:36.2790 | 1:36.8810 |
| 16th | 31 | Dalziel / Derani / Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:36.199 | 1:37.4770 | 1:36.3350 | 1:36.5440 | 1:36.1990 |
| 17th | 35 | Cheng / Panciatici / Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:36.248 | 1:36.4880 | 1:36.2480 | 1:36.4550 | 1:36.4470 |
| 18th | 37 | Petrov / Ladygin / Shaytar | BR01 Nissan | SMP Racing | 1:36.532 | 1:36.9820 | 1:37.6030 | 1:36.9810 | 1:36.5320 |
| 19th | 27 | Minassian / Mediani | BR01 Nissan | SMP Racing | 1:36.962 | 1:36.9740 | 1:37.3720 | 1:37.0340 | 1:36.9620 |
| 20th | 30 | Sharp / Brown / Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:37.208 | 1:37.4980 | 1:37.8130 | 1:37.9810 | 1:37.2080 |
| 21st | 97 | Stanaway / Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:39.496 | 1:40.1340 | 1:40.6330 | 1:40.5490 | 1:39.4960 |
| 22nd | 95 | Sørensen / Thiim | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:39.572 | 1:40.2080 | 1:40.4780 | 1:40.4770 | 1:39.5720 |
| 23rd | 66 | Mücke / Pla | Ford GT | Ford Chip Ganassi Team UK | 1:40.492 | 1:41.3470 | 1:41.5980 | 1:41.5270 | 1:40.4920 |
| 24th | 51 | Bruni / Calado | Ferrari 488 GTE | AF Corse | 1:40.554 | 1:40.9340 | 1:41.0250 | 1:40.5540 | 1:41.4130 |
| 25th | 67 | Franchitti / Priaulx / Tincknell | Ford GT | Ford Chip Ganassi Team UK | 1:40.808 | 1:41.4160 | 1:41.2340 | 1:41.5640 | 1:40.8080 |
| 26th | 77 | Lietz / Christensen | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 1:40.998 | 1:41.1640 | 1:41.6610 | 1:41.6170 | 1:40.9980 |
| 27th | 71 | Rigon / Bird | Ferrari 488 GTE | AF Corse | 1:41.292 | 1:41.2980 | 1:41.4870 | 1:41.5880 | 1:41.2920 |
| 28th | 88 | Al Qubaisi / Heinemeier Hansson / Long | Porsche 991 RSR | Abu Dhabi-Proton Racing | 1:41.823 | 1:42.1420 | 1:42.3280 | 1:42.5620 | 1:41.8230 |
| 29th | 98 | Dalla Lana / Lamy / Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:42.009 | 1:42.0090 | 1:42.3010 | 1:42.7110 | 1:42.2320 |
| 30th | 86 | Wainwright / Carroll / Barker | Porsche 991 RSR | Gulf Racing | 1:42.204 | 1:42.2420 | 1:42.2040 | 1:42.3210 | 1:42.3370 |
| 31st | 83 | Perrodo / Collard / Aguas | Ferrari 458 Italia | AF Corse | 1:42.408 | 1:43.2530 | 1:42.7950 | 1:43.1730 | 1:42.4080 |
| 32nd | 78 | Ried / Henzler / Camathias | Porsche 991 RSR | KCMG | 1:42.474 | 1:43.3510 | 1:42.4740 | 1:43.3210 | 1:43.4380 |
| 33rd | 50 | Yamagishi / Ragues / Taylor | Chevrolet Corvette C7-Z06 | Larbre Competition | 1:42.760 | 1:42.9840 | 1:43.3080 | 1:42.9600 | 1:42.7600 |