| 1st | 8 | di Grassi / Duval / Jarvis | Audi R18 | Audi Sport Team Joest | 1:38.777 | 1:38.7770 | 1:40.7790 | 1:41.1360 | 1:41.5420 |
| 2nd | 7 | Lotterer / Fässler | Audi R18 | Audi Sport Team Joest | 1:39.239 | 1:39.2390 | 1:40.3250 | 1:41.0110 | 1:41.9990 |
| 3rd | 2 | Dumas / Jani / Lieb | Porsche 919 Hybrid | Porsche Team | 1:39.309 | 1:39.3090 | 1:40.8440 | 1:41.7030 | 1:42.2390 |
| 4th | 1 | Bernhard / Webber / Hartley | Porsche 919 Hybrid | Porsche Team | 1:39.678 | 1:39.6780 | 1:40.6090 | 1:40.9970 | 1:41.0020 |
| 5th | 6 | Sarrazin / Conway / Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:40.571 | 1:40.5710 | 1:41.4720 | 1:41.8220 | 1:42.3090 |
| 6th | 5 | Davidson / Buemi / Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:40.645 | 1:40.6450 | 1:41.2770 | 1:42.3250 | 1:41.2930 |
| 7th | 13 | Tuscher / Kraihamer / Imperatori | Rebellion R-One AER | Rebellion Racing | 1:45.900 | 1:45.9000 | 1:47.3350 | 1:46.7900 | 1:46.9010 |
| 8th | 4 | Kaffer / Trummer / Webb | CLM P1/01 AER | Bykolles Racing Team | 1:46.642 | 1:46.6420 | 1:47.8060 | 1:47.3300 | 1:47.6320 |
| 9th | 12 | Prost / Heidfeld / Beche | Rebellion R-One AER | Rebellion Racing | 1:46.958 | 1:46.9580 | 1:47.9250 | 1:47.6100 | 1:47.3230 |
| 10th | 26 | Rusinov / Rast / Brundle | Oreca 05 Nissan | G-Drive Racing | 1:48.294 | 1:48.2940 | 1:49.8640 | 1:48.9650 | 1:50.2600 |
| 11th | 43 | Gonzalez / Albuquerque / Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:49.256 | 1:49.2560 | 1:51.1240 | 1:51.4690 | 1:52.0880 |
| 12th | 31 | Dalziel / Derani / Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:49.560 | 1:49.5600 | 1:51.2770 | 1:51.6690 | 1:53.1410 |
| 13th | 42 | Leventis / Williamson / Kane | Gibson 015S Nissan | Strakka Racing | 1:49.600 | 1:49.6000 | 1:51.0050 | 1:50.0310 | 1:52.5370 |
| 14th | 36 | Menezes / Lapierre / Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:49.643 | 1:49.6430 | 1:50.8520 | 1:50.5370 | 1:51.3870 |
| 15th | 44 | Graves / Pizzonia / Howson | Oreca 05 Nissan | Manor | 1:49.837 | 1:49.8370 | 1:51.0160 | 1:50.6370 | 1:50.9830 |
| 16th | 35 | Cheng / Panciatici / Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:49.878 | 1:49.8780 | 1:51.9380 | 1:50.8440 | 1:51.2460 |
| 17th | 45 | Rao / Bradley / Merhi | Oreca 05 Nissan | Manor | 1:50.031 | 1:50.0310 | 1:51.3810 | 1:50.2760 | 1:51.5970 |
| 18th | 27 | Minassian / Mediani | BR01 Nissan | SMP Racing | 1:50.410 | 1:50.4100 | 1:51.8720 | 1:51.9970 | 1:52.7000 |
| 19th | 37 | Petrov / Ladygin / Shaytar | BR01 Nissan | SMP Racing | 1:51.310 | 1:51.3100 | 1:52.4590 | 1:52.6050 | 1:51.9680 |
| 20th | 30 | Sharp / Brown / Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:51.571 | 1:51.5710 | 1:52.4730 | 1:52.0590 | 1:52.2980 |
| 21st | 97 | Stanaway / Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:56.908 | 2:00.2150 | 1:58.0680 | 1:56.9080 | 1:58.1340 |
| 22nd | 51 | Bruni / Calado | Ferrari 488 GTE | AF Corse | 1:56.982 | 1:58.5480 | 1:57.7280 | 1:56.9820 | 1:57.1450 |
| 23rd | 71 | Rigon / Bird | Ferrari 488 GTE | AF Corse | 1:57.187 | 2:06.3710 | 1:57.9360 | 1:57.1870 | 1:57.3650 |
| 24th | 95 | Sørensen / Thiim | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:57.258 | 1:59.0330 | 1:57.2930 | 1:57.2580 | 1:58.5810 |
| 25th | 67 | Franchitti / Priaulx / Tincknell | Ford GT | Ford Chip Ganassi Team UK | 1:57.297 | 2:00.1970 | 1:57.2970 | 1:58.5390 | 1:57.5300 |
| 26th | 66 | Mücke / Pla | Ford GT | Ford Chip Ganassi Team UK | 1:57.461 | 2:01.0340 | 1:57.8900 | 1:57.4610 | 1:58.8310 |
| 27th | 77 | Lietz / Christensen | Porsche 991 RSR (2016) | Dempsey-Proton Racing | 1:58.307 | 2:00.5770 | 1:58.3070 | 1:58.9230 | 1:58.3710 |
| 28th | 83 | Perrodo / Collard / Aguas | Ferrari 458 Italia | AF Corse | 1:59.200 | 2:01.6440 | 1:59.6580 | 1:59.2000 | 2:00.9260 |
| 29th | 50 | Yamagishi / Ragues / Ruberti | Chevrolet Corvette C7-Z06 | Larbre Competition | 1:59.203 | 2:07.1840 | 1:59.2030 | 1:59.3230 | 2:01.0570 |
| 30th | 88 | Al Qubaisi / Heinemeier Hansson / Long | Porsche 991 RSR | Abu Dhabi-Proton Racing | 1:59.408 | 2:01.8440 | 1:59.4080 | 1:59.5740 | 2:00.3600 |
| 31st | 98 | Dalla Lana / Lamy / Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 1:59.875 | 2:05.7320 | 1:59.8940 | 1:59.8750 | 2:01.6330 |
| 32nd | 78 | Ried / Henzler / Camathias | Porsche 991 RSR | KCMG | 1:59.893 | 2:02.2370 | 1:59.8930 | 2:00.6720 | 2:00.9960 |
| 33rd | 86 | Wainwright / Carroll / Barker | Porsche 991 RSR | Gulf Racing | 1:59.898 | 2:08.3650 | 2:00.0730 | 1:59.8980 | 2:02.0050 |