(All Session Laps)
| Pos. | No. | Drivers | Car | Entrant | All Best | Q Time |
| 1st | 18 | Wakisaka / Kaneishi | Honda NSX (E-NA2) | Mugen-Dome Project | 2:13.037 | 2:13.0370 |
| 2nd | 1 | Comas / Motoyama | Nissan Skyline GT-R (BNR34) | NISMO | 2:14.698 | 2:14.6980 |
| 3rd | 64 | Coronel / Yamanishi | Honda NSX (E-NA2) | Mobil1 Nakajima Racing | 2:15.790 | 2:15.7900 |
| 4th | 36 | Sekiya / Kurosawa | Toyota Supra (JZA80) | Toyota Castrol Team TOM'S | 2:16.088 | 2:16.0880 |
| 5th | 100 | Takahashi / Iida | Honda NSX (E-NA2) | Team Kunimitsu with Mooncraft | 2:16.825 | 2:16.8250 |
| 6th | 16 | Nakako / Michigami | Honda NSX (E-NA2) | Mugen-Dome Project | 2:17.661 | 2:17.6610 |
| 7th | 37 | Suzuki / Katayama | Toyota Supra (JZA80) | Toyota Castrol Team TOM'S | 2:18.374 | 2:18.3740 |
| 8th | 39 | Tsuchiya / Kageyama | Toyota Supra (JZA80) | Toyota Team SARD | 2:18.375 | 2:18.3750 |
| 9th | 12 | Hoshino / Kageyama | Nissan Skyline GT-R (BNR34) | Team Impul | 2:18.431 | 2:18.4310 |
| 10th | 2 | Suzuki / Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 2:19.170 | 2:19.1700 |
| 11th | 3 | Hasemi / Tanaka | Nissan Skyline GT-R (BCNR33) | Hasemi Motorsports | 2:19.400 | 2:19.4000 |
| 12th | 35 | Raphanel / Yamaji | Toyota Supra (JZA80) | Matsumoto-Kiyoshi Team TOM'S | 2:20.562 | 2:20.5620 |
| 13th | 32 | Kinoshita / Kondou | Toyota Supra (JZA80) | cdma One Toyota Team Cerumo with Key's | 2:22.954 | 2:22.9540 |
| 14th | 38 | Takeuchi / Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 2:24.012 | 2:24.0120 |
| 15th | 88 | Wada / Furuya | Lamborghini Diablo (ZA90DE068) | JLOC | 2:25.781 | 2:25.7810 |
| 16th | 81 | Fukuyama / Ohyagi | Nissan Silvia (S15) | Team Daishin | 2:25.926 | 2:25.9260 |
| 17th | 77 | Kobayashi / Tanigawa | Subaru Impreza (GC4) | Cusco Racing | 2:26.142 | 2:26.1420 |
| 18th | 910 | Yogou / Tamamoto | Porsche 993 RSR | 910 Racing | 2:26.183 | 2:26.1830 |
| 19th | 99 | Yoshitomi / Hioki | Porsche 993 RSR | Team Daikokuya | 2:26.710 | 2:26.7100 |
| 20th | 7 | Matsumoto / Yamano | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:27.372 | 2:27.3720 |
| 21st | 9 | Hane / Tokuda | Porsche 993 RSR | Team Daikokuya | 2:27.772 | 2:27.7720 |
| 22nd | 15 | Tsuchiya / Ide | Nissan Silvia (S15) | NISMO | 2:28.220 | 2:28.2200 |
| 23rd | 21 | Hitotsuyama / Itou | BMW M3 (E36) | Hitotsuyama Racing | 2:29.058 | 2:29.0580 |
| 24th | 71 | Jounai / Kawano | Porsche 911 GT2 | Sigmatec Racing Team | 2:29.241 | 2:29.2410 |
| 25th | 19 | Orido / Hara | Toyota Celica (ST205) | Racing Project Bandoh | 2:30.028 | 2:30.0280 |
| 26th | 10 | Asou / Hinoi | Porsche 911 GT2 | Ability Motorsports | 2:30.280 | 2:30.2800 |
| 27th | 25 | Nitta / Kikuchi | Toyota MR-2 (SW20) | Momocorse Racing Team with Tsuchiya | 2:30.331 | 2:30.3310 |
| 28th | 14 | Kozai / Komiya | Nissan Silvia (S14) | Alta Racing Team | 2:30.902 | 2:30.9020 |
| 29th | 70 | Ishibashi / van Schoote | Porsche 911 GT2 | Team Gaikokuya | 2:31.447 | 2:31.4470 |
| 30th | 26 | Suga / Sunako | Porsche 911 RSR | Team Tasian Jr. | 2:31.515 | 2:31.5150 |
| 31st | 61 | Nakaya / Firman | Mitsubishi FTO (E-DE3A) | Team Taeivon Ralliart | 2:32.212 | 2:32.2120 |
| 32nd | 72 | Ishikawa / Hirano | Mazda RX-7 (FD3S) | Okura Rotary Racing | 2:37.876 | 2:37.8760 |
| 33rd | 55 | Matsuda / Tajima | Chrysler Viper GTS-R | Team Taisan | 2:48.912 | 2:48.9120 |
| 34th | 11 | Wada / Kinoshita | Nissan Skyline GT-R (BCNR33) | Endless Sports | 2:56.107 | 2:56.1070 |
| 35th | 30 | Yamada / Okada | McLaren F1 GTR (19R GTR) | Team Take One | 3:04.258 | 3:04.2580 |
Entered cars that did not arrive:
| No. | Drivers | Car | Entrant |
| 6 | Hideki Noda | Toyota Supra (JZA80) | Esso Tiger Team Le Mans |
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