| 1st | 61 | Katou / Ara | Audi R8 | Audi Sport Japan Team Goh | 1:52.856 | 1:52.8560 | 1:54.1680 | 1:57.7060 |
| 2nd | 6 | Wakisaka / Iida / Wakisaka | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:58.003 | 1:58.0030 | 2:01.3550 | 2:01.0550 |
| 3rd | 18 | Philippe / Kaneishi / Lyons | Honda NSX (GH-NA2) | Dome Mugen Project | 1:58.436 | 1:58.4360 | 2:01.0920 | 2:02.3440 |
| 4th | 16 | Michigami / Itou / Mitsusada | Honda NSX (GH-NA2) | Dome Mugen Project | 1:59.008 | 1:59.0080 | 2:01.3490 | 2:01.5280 |
| 5th | 23 | Kageyama / Krumm / Tanaka | Nissan Skyline GT-R (BNR34) | NISMO | 1:59.571 | 1:59.5710 | 2:01.4310 | 2:03.5510 |
| 6th | 39 | Dufour / Orido / Taniguchi | Toyota Supra (JZA80) | Toyota Team SARD | 2:00.225 | 2:00.2250 | 2:01.9260 | 2:00.9910 |
| 7th | 88 | Wada / Apicella | Lamborghini Diablo (DE21) | JLOC | 2:05.691 | 2:05.6910 | 2:07.5960 | 2:07.7990 |
| 8th | 62 | Shibahara / Mitsuyama | Vemac RD320R | R&D Sport | 2:08.190 | 2:08.1900 | 2:10.4060 | 2:12.2740 |
| 9th | 3 | Sakaguchi / Furuya / Kouuchi | Oscar SK5.2 Toyota | Max Racing | 2:08.228 | 2:08.2280 | 2:10.3490 | 2:16.3070 |
| 10th | 52 | Nishimura / Tomimoto / Furuya | Oscar SK5.2 Toyota | Nishimura Hidetoshi | 2:09.814 | 2:09.8140 | 2:11.5090 | 2:22.3470 |
| 11th | 22 | Yamamoto / Yamamoto / Chikada | Oscar SK5.2 Toyota | Nagai Iin Motor Sport Club | 2:09.854 | 2:09.8540 | 2:13.2500 | 2:17.9160 |
| 12th | 5 | Tamanaka / Hinoi | Mosler MT900R | A&S Racing | 2:09.900 | 2:09.9000 | 2:13.8250 | 2:12.9380 |
| 13th | 71 | Jounai / Sawa / Tajima | Toyota MR-S (GH-ZZW30) | Sigmatech Racing Team | 2:10.649 | 2:10.6490 | 2:13.6590 | 2:14.6590 |
| 14th | 55 | Kimoto / Dumas / Pompidou | Porsche 996 GT3-RS | Kimoto Racing Team | 2:11.484 | 2:11.4840 | 2:14.5170 | 2:13.0080 |
| 15th | 930 | Yamada / Miyagawa / Ochiai | Porsche 930 | M's Machine Works | 2:12.116 | 2:12.1160 | 2:14.6830 | 2:16.9840 |
| 16th | 15 | Hashimoto / Kwan | BMW M3 GT (E46) | Amprex Motorsport | 2:12.421 | 2:12.4210 | 2:14.1210 | 2:17.0570 |
| 17th | 2 | Takahashi / Watanabe / Suga | Honda NSX (GH-NA2) | Verno Tokai Dream 28 | 2:12.457 | 2:12.4570 | 2:14.9020 | 2:14.5590 |
| 18th | 9 | Takenaka / Tsutsumi / Hioki | Porsche 996 GT3-R | Team Daikokuya | 2:12.465 | 2:12.4650 | 2:17.1100 | 2:19.8210 |
| 19th | 911 | Hirakawa / Koyama / Wilcox | Porsche 996 GT3-RS | 910 Racing | 2:13.607 | 2:13.6070 | 2:13.7570 | 2:13.8050 |
| 20th | 8 | Kaku / Mikami / Toujou | Oscar SK5.2 Toyota | Repri Sport | 2:15.076 | 2:15.0760 | 2:15.9290 | 2:23.7570 |
| 21st | 70 | Ishibashi / van Schoote / Orcutt | Porsche 996 GT3-RS | Team Gaikokuya | 2:16.880 | 2:16.8800 | 2:17.8500 | 2:22.0280 |
| 22nd | 19 | Koshimizu / Ueda / Aoki | Nissan Skyline GT-R (BNR34) | JMC Racing Division | 2:17.706 | 2:17.7060 | 2:19.3520 | 2:20.7770 |
| 23rd | 34 | Sunako / Tsubobayashi / Itaka | Nissan Skyline GT-R (BNR34) | Susuki Racing Machanics | 2:18.210 | 2:18.2100 | 2:21.7410 | 2:24.2950 |
| 24th | 912 | Haga / Iijima / Wada | Porsche GT3 Cup | 910 Racing | 2:18.869 | 2:18.8690 | 2:21.6580 | 2:22.2090 |
| 25th | 1 | Kasuya / Iketani / Yoshikawa | Nissan Skyline GT-R | Oreka Technic Ideal | 2:19.446 | 2:19.4460 | 2:22.7620 | 2:21.2930 |
| 26th | 14 | Satou / Tanaka / Kanamori | West 936S Toyota | Team Jikanwari | 2:19.980 | 2:24.8130 | 2:19.9800 | 2:26.6070 |
| 27th | 36 | Tanaka / Sodeyama / Inoue | Porsche 911 RSR | | 2:21.237 | 2:21.2370 | 2:24.0250 | 2:25.2030 |
| 28th | 20 | Komiya / Kobayashi / Itou | Mitsubishi Lancer (CT9A) | RS Ogawa | 2:21.778 | 2:21.7780 | 2:25.7680 | 2:25.4150 |
| 29th | 11 | Tomimasu / Seki / Kouketsu | Mitsubishi Lancer (CT9A) | Shinryou Racing Team | 2:24.103 | 2:24.1030 | 2:26.8900 | 2:27.9360 |
| 30th | 33 | Miyoshi / Muramatsu / Sekine | Mazda RX-7 (FD3S) | I-dea Project | 2:25.008 | 2:25.0080 | 2:29.3090 | 2:30.5500 |
| 31st | 7 | Katagiri / Hashizawa / Hara | Lotus Elise | Wing Auto | 2:25.233 | 2:25.2330 | 2:33.3850 | 2:32.8680 |
| 32nd | 280 | Ooshiro / Murakami / Sakai | Honda NSX | GT-ROM Net Nsx Owners Club | 2:25.862 | 2:25.8620 | 2:25.9360 | 2:27.9880 |
| 33rd | 45 | Asano / Kasahara | Honda Integra Type R (DC5) | Asano Racing Service | 2:28.250 | 2:28.2500 | 2:30.8580 | 2:31.1000 |
| 34th | 73 | Takara / Yamazaki / Yamamoto | Honda Integra Type R (DC5) | Team A-One | 2:29.169 | 2:29.1690 | 2:33.3690 | 2:30.6830 |
| 35th | 602 | Okada / Iwatsuki / Torii | Mitsubishi Lancer (CT9A) | Team Jikanwari | 2:31.813 | 2:31.8130 | 2:33.5350 | 2:38.7510 |