| 1st | 15 | Mutou / Turvey | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:47.456 | 1:47.4560 | 1:51.3810 | 1:47.9100 |
| 2nd | 46 | Motoyama / Takaboshi | Nissan GT-R Nismo GT500 (R35) | Mola | 1:47.587 | 1:47.5870 | 1:51.1210 | 1:48.3220 |
| 3rd | 12 | Yasuda / de Oliveira | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:47.922 | 1:47.9220 | 1:52.1840 | 1:49.0540 |
| 4th | 24 | Sasaki / Yanagida | Nissan GT-R Nismo GT500 (R35) | Kondo Racing | 1:47.963 | 1:47.9630 | 1:50.9240 | 1:48.6290 |
| 5th | 19 | Sekiguchi / Kunimoto | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:48.007 | 1:48.0070 | 1:52.3720 | 1:48.2080 |
| 6th | 100 | Yamamoto / Izawa | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:48.071 | 1:49.1500 | 1:51.7340 | 1:48.0710 |
| 7th | 8 | Matsuura / Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:48.108 | 1:48.1080 | 1:51.0670 | 1:48.6930 |
| 8th | 38 | Tachikawa / Ishiura | Lexus RC F (USC10) | Lexus Team Zent Cerumo | 1:48.129 | 1:48.1290 | 1:51.0140 | 1:48.4540 |
| 9th | 36 | Itou / Cassidy | Lexus RC F (USC10) | Lexus Team Tom's | 1:48.408 | 1:48.8610 | 1:51.3520 | 1:48.4080 |
| 10th | 37 | Rossiter / Hirakawa | Lexus RC F (USC10) | Lexus Team Tom's | 1:48.508 | 1:49.1570 | 1:52.7060 | 1:48.5080 |
| 11th | 17 | Tsukakoshi / Kogure | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:48.510 | 1:48.5340 | 1:51.8670 | 1:48.5100 |
| 12th | 64 | Nakajima / Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:48.679 | 1:48.6790 | 1:52.3510 | 1:50.1820 |
| 13th | 6 | Oshima / Caldarelli | Lexus RC F (USC10) | Lexus Team Le Mans Wako's | 1:48.763 | 1:48.7630 | 1:51.7270 | 1:48.9180 |
| 14th | 1 | Matsuda / Quintarelli | Nissan GT-R Nismo GT500 (R35) | NISMO | 1:48.896 | 1:48.8960 | 1:52.7930 | 1:49.3970 |
| 15th | 39 | Kovalainen / Hirate | Lexus RC F (USC10) | Lexus Team Sard | 1:49.204 | 1:49.2040 | 1:52.3280 | 1:49.7160 |
| 16th | 2 | Takahashi / Katou / Makino | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:57.811 | 1:57.8110 | 2:01.4010 | 1:58.6030 |
| 17th | 18 | Nakayama / Yamada | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:57.876 | 1:57.8760 | 2:01.3010 | 1:59.7820 |
| 18th | 31 | Saga / Nakayama | Toyota Prius (ZVW50) | Apr | 1:58.092 | 1:58.0920 | 2:01.9440 | 2:00.1240 |
| 19th | 61 | Iguchi / Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:58.348 | 1:58.3480 | 2:01.9760 | 1:59.9780 |
| 20th | 25 | Tsuchiya / Matsui / Yamashita | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:58.608 | 1:58.6080 | 2:02.1280 | 1:59.3690 |
| 21st | 65 | Kurosawa / Gamou | Mercedes-AMG GT3 (197) | K2 R&D Leon Racing | 1:58.923 | 1:58.9230 | 2:01.5150 | 1:59.3600 |
| 22nd | 88 | Orido / Hiramine | Lamborghini Huracán GT3 | JLOC | 1:58.934 | 1:58.9340 | 2:02.7540 | 2:00.2510 |
| 23rd | 0 | Couto / Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.947 | 1:58.9470 | 2:01.5920 | 1:59.9000 |
| 24th | 4 | Taniguchi / Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:58.981 | 1:58.9810 | 2:01.5240 | 1:59.8750 |
| 25th | 26 | Mitsuyama / Motojima / Nakano | Audi R8 LMS Ultra | Team Taisan SARD | 1:59.179 | 1:59.1790 | 2:01.7370 | 2:00.0010 |
| 26th | 33 | Yamano / Sakamoto | Porsche 991 GT3 R | Excellence Porsche Team KTR | 1:59.230 | 1:59.2300 | 2:01.7540 | 2:00.5650 |
| 27th | 3 | Hoshino / Mardenborough | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:59.443 | 1:59.4430 | 2:01.8110 | 2:00.0990 |
| 28th | 63 | Zaugg / Yokomizo | Lamborghini Huracán GT3 | Lamboghini Team Direction | 1:59.728 | 1:59.7280 | 2:02.6300 | 2:00.2470 |
| 29th | 21 | Lyons / Fujii | Audi R8 LMS | Audi Team Hitotsuyama | 1:59.949 | 1:59.9490 | 2:01.9670 | 2:00.4170 |
| 30th | 11 | Hiranaka / Wirdheim | Mercedes-AMG GT3 | Gainer | 2:00.288 | 2:00.3660 | 2:02.7490 | 2:00.2880 |
| 31st | 48 | Takamori / Tanaka / Aoki | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 2:00.522 | 2:00.5220 | 2:02.7230 | 2:01.2440 |
| 32nd | 87 | Hosokawa / Satou / Iida | Lamborghini Huracán GT3 | JLOC | 2:00.530 | 2:00.5300 | 2:02.7760 | 2:02.3320 |
| 33rd | 51 | Tsuduki / Nitta / Wakisaka | Ferrari 488 GT3 | LM Corsa | 2:00.563 | 2:00.5630 | 2:02.7750 | 2:00.6480 |
| 34th | 360 | Shibata / Tanaka / Kiyohara | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:00.609 | 2:00.6090 | 2:01.8640 | 2:01.2540 |
| 35th | 7 | Farfus / Ara / Müller | BMW M6 GT3 (F13) | BMW Team Studie | 2:00.654 | 2:00.6540 | | 2:06.2200 |
| 36th | 9 | Sakaguchi / Yoshida | Porsche 991 GT3 R | Gulf Racing With Pacific | 2:00.720 | 2:00.7200 | 2:03.6590 | 2:00.8800 |
| 37th | 108 | Mineo / Lester / Takeuchi | Lamborghini Huracán GT3 | Lamboghini Team Direction Shift | 2:00.782 | 2:00.7820 | 2:03.6230 | 2:01.2640 |
| 38th | 111 | Ueda / Tsuruta / Ishikawa | Mercedes-AMG GT3 | Rn-sports | 2:01.074 | 2:01.0740 | 2:03.3190 | 2:01.8400 |
| 39th | 55 | Takagi / Kobayashi | BMW M6 GT3 (F13) | Autobacs Racing Team Aguri | 2:01.168 | 2:01.1680 | 2:02.4870 | 2:01.5150 |
| 40th | 5 | Tamanaka / Yamashita / Kageyama | Toyota 86 MC (86/ZN6) | Team Mach | 2:01.178 | no time | 2:03.7240 | 2:01.1780 |
| 41st | 60 | Iida / Yoshimoto / Farnbacher | Lexus RC F GT3 (USC10) | LM Corsa | 2:01.411 | 2:06.1360 | 2:03.8580 | 2:01.4110 |
| 42nd | 30 | Nagai / Sasaki | Toyota Prius (ZVW50) | Apr | 2:02.352 | 2:09.7390 | 2:03.5140 | 2:02.3520 |
| 43rd | 50 | Yasuoka / Kubo / Kano | Mercedes-Benz SLS AMG GT3 (197) | Arnage Racing | 2:02.483 | 3:30.9500 | 2:04.1200 | 2:02.4830 |
| 44th | 22 | Wada / Jounai / Azuma | Mercedes-Benz SLS AMG GT3 | RQ's Motorsports | 2:02.591 | 2:02.5910 | 2:04.4490 | 2:02.6960 |