| 1st | 24 | Sasaki / de Oliveira | Nissan GT-R Nismo GT500 (R35) | Kondo Racing | 1:47.074 | 1:47.0740 | 1:51.5240 | 1:48.6770 |
| 2nd | 19 | Sekiguchi / Kunimoto / Kobayashi | Lexus LC500 (URZ100) | Lexus Team WedsSport Bandoh | 1:47.269 | 1:47.2690 | 1:51.7210 | 1:50.8490 |
| 3rd | 100 | Yamamoto / Izawa | Honda NSX-GT (NC1) | Team Kunimitsu | 1:47.576 | 1:47.5760 | 1:52.4740 | 1:48.5600 |
| 4th | 46 | Motoyama / Chiyo | Nissan GT-R Nismo GT500 (R35) | Mola | 1:47.588 | 1:47.5880 | 1:52.1280 | 1:48.6780 |
| 5th | 17 | Tsukakoshi / Kogure | Honda NSX-GT (NC1) | Keihin Real Racing | 1:47.648 | 1:47.6480 | 1:51.9970 | 1:49.2030 |
| 6th | 64 | Matsuura / Baguette | Honda NSX-GT (NC1) | Nakajima Racing | 1:47.812 | 1:47.8120 | 1:52.0680 | 1:49.8190 |
| 7th | 37 | Hirakawa / Cassidy | Lexus LC500 (URZ100) | Lexus Team KeePer Tom's | 1:48.196 | 1:48.1960 | 1:53.1210 | 1:49.7110 |
| 8th | 12 | Yasuda / Mardenborough | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:48.244 | 1:48.2440 | 1:52.4090 | 1:49.4630 |
| 9th | 16 | Mutou / Nakajima / Button | Honda NSX-GT (NC1) | Team Mugen | 1:48.588 | 1:48.5880 | 1:52.5320 | 1:49.2840 |
| 10th | 36 | Nakajima / Rossiter | Lexus LC500 (URZ100) | Lexus Team au Tom's | 1:48.825 | 1:48.8250 | 1:53.2010 | 1:50.6500 |
| 11th | 6 | Oshima / Caldarelli | Lexus LC500 (URZ100) | Lexus Team Le Mans Wako's | 1:49.002 | 1:49.0020 | 1:53.5290 | 1:49.8390 |
| 12th | 23 | Matsuda / Quintarelli | Nissan GT-R Nismo GT500 (R35) | NISMO | 1:49.146 | 1:49.1460 | 1:52.7910 | 1:50.0250 |
| 13th | 38 | Tachikawa / Ishiura | Lexus LC500 (URZ100) | Lexus Team Zent Cerumo | 1:49.196 | 1:49.1960 | 1:53.0430 | 1:50.5440 |
| 14th | 1 | Kovalainen / Hirate | Lexus LC500 (URZ100) | Lexus Team SARD | 1:49.229 | 1:49.2290 | 1:53.2430 | 1:50.2370 |
| 15th | 8 | Nojiri / Kobayashi | Honda NSX-GT (NC1) | Autobacs Racing Team Aguri | 1:49.782 | 1:50.1200 | 1:53.2470 | 1:49.7820 |
| 16th | 25 | Matsui / Yamashita / Kondo | Toyota 86 MC (ZN6) | Vivac Team Tsuchiya | 1:57.543 | 1:57.5430 | 2:01.9860 | 2:00.1810 |
| 17th | 18 | Nakayama / Kawabata | Toyota 86 MC (ZN6) | Team Upgarage With Bandoh | 1:58.000 | 1:58.0000 | 2:01.3800 | 2:00.3950 |
| 18th | 5 | Sakaguchi / Fujinami / Tamanaka | Toyota 86 MC (ZN6) | Team Mach | 1:58.146 | 1:58.1460 | 2:01.7070 | 2:00.8360 |
| 19th | 4 | Taniguchi / Kataoka | Mercedes-AMG GT3 (C190) | Goodsmile Racing & Team Ukyo | 1:58.235 | 1:58.2350 | 2:02.2630 | 2:00.2730 |
| 20th | 51 | Nakayama / Tsuboi | Lexus RC F GT3 (USC10) | LM Corsa | 1:58.581 | 1:58.5810 | 2:01.4890 | 2:00.0100 |
| 21st | 60 | Iida / Yoshimoto | Lexus RC F GT3 (USC10) | LM Corsa | 1:58.742 | 1:58.7420 | 2:02.0420 | 2:00.4760 |
| 22nd | 10 | Tomita / Yoshida | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:58.774 | 1:58.7740 | 2:02.0120 | 2:00.2830 |
| 23rd | 61 | Iguchi / Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:58.816 | 1:58.8160 | 2:02.7850 | 2:00.7690 |
| 24th | 65 | Kurosawa / Gamou | Mercedes-AMG GT3 (C190) | K2 R&D Leon Racing | 1:58.967 | 1:58.9670 | 2:01.5040 | 1:59.3570 |
| 25th | 88 | Orido / Hiramine / Yamanishi | Lamborghini Huracán GT3 | JLOC | 1:59.170 | 1:59.1700 | 2:02.5150 | 2:01.0680 |
| 26th | 33 | Fujii / Müller | Porsche 991 GT3 R | D'station Racing | 1:59.175 | 1:59.1750 | 2:01.9620 | 1:59.4000 |
| 27th | 30 | Nagai / Sasaki | Toyota Prius (ZVW51) | Apr | 1:59.336 | 1:59.3360 | 2:02.7450 | 2:01.7490 |
| 28th | 21 | Lyons / Yanagida | Audi R8 LMS (ABA-4SCSPD) | Audi Team Hitotsuyama | 1:59.517 | 1:59.5170 | 2:03.3450 | 2:00.3480 |
| 29th | 50 | Tsuduki / Nitta | Ferrari 488 GT3 (F142M) | Inging & Arnage Racing | 1:59.556 | 1:59.5560 | 2:02.9700 | 2:01.7730 |
| 30th | 31 | Saga / Kubo | Toyota Prius (ZVW51) | Apr | 1:59.586 | 1:59.5860 | 2:03.0190 | 2:00.8820 |
| 31st | 3 | Hoshino / Takaboshi | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:59.614 | 1:59.6140 | 2:02.0720 | 2:00.3580 |
| 32nd | 2 | Takahashi / Katou / Hamaguchi | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:59.670 | 1:59.6700 | 2:02.6390 | 2:00.3620 |
| 33rd | 9 | Lester / Mineo | Porsche 991 GT3 R | Pacific with Gulf Racing | 1:59.781 | 1:59.7810 | 2:02.4200 | 2:00.5410 |
| 34th | 11 | Hiranaka / Wirdheim | Mercedes-AMG GT3 (C190) | Gainer | 1:59.939 | 1:59.9390 | 2:02.9000 | 2:00.6830 |
| 35th | 87 | Hosokawa / Satou / Motojima | Lamborghini Huracán GT3 | JLOC | 1:59.992 | 1:59.9920 | 2:02.4350 | 2:01.1150 |
| 36th | 52 | Bamba / Wakisaka / Mitsuyama | Toyota Mark X MC (GRX133) | Saitama Toyopet Green Brave | 2:00.018 | 2:00.0180 | 2:01.2280 | 2:00.5250 |
| 37th | 111 | Ishikawa / Yamashita / Ueda | Mercedes-AMG GT3 (C190) | Rn-sports | 2:00.022 | 2:00.0220 | 2:02.9770 | 2:01.6510 |
| 38th | 55 | Takagi / Walkinshaw | BMW M6 GT3 (F13) | Autobacs Racing Team Aguri | 2:00.044 | 2:00.0440 | 2:03.2010 | 2:01.8370 |
| 39th | 26 | Yamada / Parsons / Klien | Audi R8 LMS (AS4FAFG3) | Team Taisan SARD | 2:00.233 | 2:00.2330 | 2:03.6230 | 2:00.3030 |
| 40th | 7 | Farfus / Ara / Müller | BMW M6 GT3 (F13) | BMW Team Studie | 2:00.292 | 2:00.2920 | 2:01.9220 | 2:01.1710 |
| 41st | 117 | Ide / Sakaguchi | Bentley Continental GT3 (BGT3 01) | EIcars Bentley TTO | 2:01.110 | 2:01.1100 | 2:04.7600 | 2:01.6700 |
| 42nd | 360 | Shibata / Tanaka / Aoki | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 2:01.293 | 2:01.2930 | 2:03.7410 | 2:02.3080 |
| 43rd | 48 | Takamori / Tanaka / Kageyama | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 2:01.509 | 2:01.6530 | 2:04.0390 | 2:01.5090 |
| 44th | 22 | Wada / Jounai | Mercedes-Benz SLS AMG GT3 | R'Qs Motor Sports | 2:01.869 | 2:01.8690 | 2:05.0440 | 2:03.1100 |
| 45th | 35 | Charoensukhawatana / Hortongkum | Toyota 86 MC (ZN6) | Panther Team Thailand | 2:03.677 | 2:03.6770 | 2:05.0140 | 2:12.6050 |