| 1st | 7 | Lotterer / Fässler / Tréluyer | Audi R18 | Audi Sport Team Joest | 1:45.7030 | 1:45.7980 | 1:45.7030 |
| 2nd | 8 | di Grassi / Duval / Jarvis | Audi R18 | Audi Sport Team Joest | 1:45.8850 | 1:45.8850 | 1:46.0820 |
| 3rd | 2 | Dumas / Jani / Lieb | Porsche 919 Hybrid | Porsche Team | 1:46.0710 | 1:46.0710 | 1:48.5910 |
| 4th | 1 | Bernhard / Webber / Hartley | Porsche 919 Hybrid | Porsche Team | 1:46.5270 | 1:46.5270 | 1:46.5930 |
| 5th | 6 | Sarrazin / Conway / Kobayashi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:46.9530 | 1:46.9530 | 1:47.4840 |
| 6th | 5 | Davidson / Buemi / Nakajima | Toyota TS050 Hybrid | Toyota Gazoo Racing | 1:47.0770 | 1:47.0770 | 1:50.0910 |
| 7th | 13 | Tuscher / Kraihamer / Imperatori | Rebellion R-One AER | Rebellion Racing | 1:53.6420 | 1:53.6500 | 1:53.6420 |
| 8th | 4 | Trummer / Webb | CLM P1/01 AER | Bykolles Racing Team | 1:54.0690 | 1:55.0860 | 1:54.0690 |
| 9th | 36 | Menezes / Lapierre / Richelmi | Alpine A460 Nissan | Signatech Alpine | 1:55.6450 | 1:56.1400 | 1:55.6450 |
| 10th | 43 | Gonzalez / Albuquerque / Senna | Ligier JS P2 Nissan | RGR Sport by Morand | 1:55.7540 | 1:55.7540 | 1:58.9800 |
| 11th | 44 | Rao / Bradley / Merhi | Oreca 05 Nissan | Manor | 1:56.1950 | 1:56.1950 | 1:57.5510 |
| 12th | 35 | Cheng / Panciatici / Tung | Alpine A460 Nissan | Baxi DC Racing Alpine | 1:56.6870 | 1:59.4330 | 1:56.6870 |
| 13th | 31 | Dalziel / Derani / Cumming | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:56.7590 | 1:56.7590 | 2:00.0290 |
| 14th | 42 | Leventis / Williamson / Kane | Gibson 015S Nissan | Strakka Racing | 1:57.1580 | 1:57.9140 | 1:57.1580 |
| 15th | 26 | Rusinov / Rast / Brundle | Oreca 05 Nissan | G-Drive Racing | 1:57.2080 | 1:57.2080 | no time |
| 16th | 30 | Sharp / Brown / Van Overbeek | Ligier JS P2 Nissan | Extreme Speed Motorsports | 1:57.2270 | 2:04.0360 | 1:57.2270 |
| 17th | 37 | Petrov / Ladygin / Shaytar | BR01 Nissan | SMP Racing | 1:57.7190 | 1:59.0400 | 1:57.7190 |
| 18th | 27 | Minassian / Mediani | BR01 Nissan | SMP Racing | 1:58.4610 | 1:58.4610 | 1:59.0770 |
| 19th | 51 | Bruni / Calado | Ferrari 488 GTE | AF Corse | 2:04.5250 | 2:04.5250 | 2:05.1180 |
| 20th | 71 | Rigon / Bird | Ferrari 488 GTE | AF Corse | 2:04.5490 | 2:04.5490 | 2:04.7560 |
| 21st | 66 | Mücke / Pla | Ford GT | Ford Chip Ganassi Team UK | 2:04.5570 | 2:04.5570 | 2:05.0510 |
| 22nd | 95 | Sørensen / Thiim | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:04.5790 | 2:04.5790 | 2:04.6410 |
| 23rd | 97 | Turner / Rees | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:04.6950 | 2:05.0840 | 2:04.6950 |
| 24th | 67 | Franchitti / Priaulx / Tincknell | Ford GT | Ford Chip Ganassi Team UK | 2:04.9020 | 2:04.9020 | 2:05.2130 |
| 25th | 77 | Lietz / Christensen | Porsche 991 RSR (2016) | Dempsey - Proton Racing | 2:05.5270 | 2:05.5270 | 2:06.5930 |
| 26th | 50 | Viljoen / Ragues / Taylor | Chevrolet Corvette C7-Z06 | Larbre Competition | 2:06.9860 | 2:06.9860 | 2:11.3940 |
| 27th | 98 | Dalla Lana / Lamy / Lauda | Aston Martin V8 Vantage GTE | Aston Martin Racing | 2:06.9990 | 2:06.9990 | 2:08.3680 |
| 28th | 86 | Wainwright / Carroll / Barker | Porsche 991 RSR | Gulf Racing | 2:07.0610 | 2:07.0610 | 2:11.1780 |
| 29th | 88 | Al Qubaisi / Heinemeier Hansson / Estre | Porsche 991 RSR | Abu Dhabi-Proton Racing | 2:07.2820 | 2:07.2820 | 2:09.3090 |
| 30th | 78 | Ried / Henzler / Camathias | Porsche 991 RSR | KCMG | 2:08.3620 | 2:08.3620 | 2:09.2700 |
| 31st | 83 | Perrodo / Collard / Aguas | Ferrari 458 Italia | AF Corse | 2:08.5750 | 2:08.5750 | 2:09.7990 |