| 1st | 12 | Yasuda / de Oliveira | Nissan GT-R (R35) | Team Impul | 1:28.7990 | 1:29.7940 | 1:28.7990 |
| 2nd | 46 | Motoyama / Yanagida | Nissan GT-R (R35) | Mola | 1:29.2720 | 1:30.1480 | 1:29.2720 |
| 3rd | 23 | Matsuda / Quintarelli | Nissan GT-R (R35) | NISMO | 1:29.3800 | 1:29.9320 | 1:29.3800 |
| 4th | 36 | Rossiter / Hirakawa | Lexus RC F | Lexus Team Petronas Tom's | 1:29.5100 | 1:29.9030 | 1:29.5100 |
| 5th | 1 | Tachikawa / Hirate | Lexus RC F | Lexus Team Zent Cerumo | 1:29.5250 | 1:30.0120 | 1:29.5250 |
| 6th | 24 | Krumm / Sasaki | Nissan GT-R (R35) | Kondo Racing | 1:29.5580 | 1:30.2160 | 1:29.5580 |
| 7th | 39 | Ishiura / Jarvis | Lexus RC F | Lexus Team Sard | 1:29.8240 | 1:30.2610 | 1:29.8240 |
| 8th | 37 | Itou / Caldarelli | Lexus RC F | Lexus Team KeePer Tom's | 1:29.9870 | 1:30.1960 | 1:29.9870 |
| 9th | 19 | Wakisaka / Sekiguchi | Lexus RC F | Lexus Team WedsSport Bandoh | 1:30.3990 | 1:30.3990 | |
| 10th | 6 | Oshima / Kunimoto | Lexus RC F | Lexus Team Le Mans Eneos | 1:30.6500 | 1:30.6500 | |
| 11th | 18 | Yamamoto / Vernay | Honda NSX Concept-GT (NSX-P) | weider Modulo Dome Racing | 1:30.9860 | 1:30.9860 | |
| 12th | 17 | Tsukakoshi / Kaneishi | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:31.0610 | 1:31.0610 | |
| 13th | 100 | Kogure / Mutou | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:31.4190 | 1:31.4190 | |
| 14th | 32 | Nakajima / Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:31.9690 | 1:31.9690 | |
| 15th | 8 | Liuzzi / Matsuura | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:32.4770 | 1:32.4770 | |
| 17th | 3 | Hoshino / Ordoñez | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:37.8410 | 1:38.5370 | 1:37.8410 |
| 18th | 61 | Sasaki / Iguchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:38.0340 | 1:38.3940 | 1:38.0340 |
| 19th | 55 | Takagi / Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 1:38.0780 | 1:38.0780 | 1:38.1880 |
| 20th | 2 | Takahashi / Katou | McLaren MP4-12C GT3 | Cars Tokai Dream28 | 1:38.1090 | 1:38.1090 | 1:39.4900 |
| 21st | 30 | Iwasaki / Kageyama | Nissan GT-R Nismo GT3 (R35) | Apr | 1:38.2040 | 1:39.1940 | 1:38.2040 |
| 22nd | 0 | Nakayama / Nojiri | Honda CR-Z (ZF2) | Team Mugen | 1:38.3200 | 1:39.2310 | 1:38.3200 |
| 23rd | 7 | Ara / Müller | BMW Z4 GT3 (E89) | BMW Sports Trophy Team Studie | 1:38.4080 | 1:38.8110 | 1:38.4080 |
| 24th | 31 | Nitta / Saga | Toyota Prius (ZVW30) | Apr | 1:38.5330 | 1:38.8000 | 1:38.5330 |
| 25th | 9 | Shirasaka / Sakamoto / Iida | Porsche 997 GT3 R | Pacific Direction Racing | 1:38.5950 | 1:38.5950 | |
| 26th | 86 | Hosokawa / Yamanishi | Lamborghini Gallardo GT3 (09-7) | JLOC | 1:38.6350 | 1:39.0220 | 1:38.6350 |
| 27th | 4 | Taniguchi / Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 1:38.7780 | 1:38.7780 | 1:39.4480 |
| 28th | 11 | Hiranaka / Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 1:39.0170 | 1:39.0170 | |
| 29th | 360 | Tanaka / Yoshida / Fujita | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:39.0710 | 1:39.0710 | 1:39.7040 |
| 30th | 88 | Orido / Aoki | Lamborghini Gallardo GT3 (22-12226) | JLOC | 1:39.2730 | 1:39.2730 | |
| 31st | 10 | Ueda / Yamauchi | Mercedes-Benz SLS AMG GT3 | Gainer | 1:39.4590 | 1:39.4590 | |
| 32nd | 60 | Iida / Yoshimoto | BMW Z4 GT3 (E89) | LM Corsa | 1:39.5550 | 1:39.5550 | |
| 33rd | 5 | Tamanaka / Yamashita / Tsuruta | Nissan GT-R Nismo GT3 (R35) | Team Mach | 1:39.6110 | 1:39.6110 | |
| 34th | 67 | Yokomizo / Mitsuyama | Nissan GT-R Nismo GT3 (R35) | Team Taisan | 1:39.6530 | 1:39.6530 | |
| 35th | 50 | Kano / Yasuoka / Indra-Payoong | Aston Martin V12 Vantage GT3 | Arnage Racing | 1:39.6920 | 1:39.6920 | |
| 36th | 22 | Wada / Tsuchiya | Mercedes-Benz SLS AMG GT3 | R'Qs Motorsports | 1:39.7660 | 1:39.7660 | |
| 37th | 21 | Fujii / van Dam | Audi R8 LMS Ultra | Audi Team Hitotsuyama | 1:39.8260 | 1:39.8260 | |
| 38th | 65 | Kurosawa / Mineo / Kurosawa | Mercedes-Benz SLS AMG GT3 | Leon Racing | 1:39.8500 | 1:39.8500 | |
| 39th | 33 | Tsuduki / Bergmeister | Porsche 997 GT3 R | Porsche Team KTR | 1:44.0590 | 1:44.0590 | |
| 40th | 48 | Takamori / Tanaka / Inoue | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | no time | no time | |