| 2nd | 46 | Motoyama / Chiyo | Nissan GT-R Nismo GT500 (R35) | Mola | 1:27.3660 | 1:27.3660 | 1:27.6870 |
| 1st | 12 | Yasuda / de Oliveira | Nissan GT-R Nismo GT500 (R35) | Team Impul | 1:27.4530 | 1:27.9310 | 1:27.4530 |
| 3rd | 38 | Tachikawa / Ishiura | Lexus RC F (USC10) | Lexus Team Zent Cerumo | 1:27.9600 | 1:28.3050 | 1:27.9600 |
| 4th | 1 | Matsuda / Quintarelli | Nissan GT-R Nismo GT500 (R35) | NISMO | 1:27.9730 | 1:28.4180 | 1:27.9730 |
| 5th | 39 | Kovalainen / Hirate | Lexus RC F (USC10) | Lexus Team Sard | 1:27.9960 | 1:28.4930 | 1:27.9960 |
| 7th | 24 | Sasaki / Yanagida | Nissan GT-R Nismo GT500 (R35) | Kondo Racing | 1:28.2680 | 1:28.2680 | 1:28.5380 |
| 6th | 15 | Mutou / Turvey | Honda NSX Concept-GT (NSX-P) | Drago Modulo Honda Racing | 1:28.3260 | 1:28.5320 | 1:28.3260 |
| 8th | 100 | Yamamoto / Izawa | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:28.5330 | 1:28.5330 | 1:28.7360 |
| 9th | 37 | Rossiter / Hirakawa | Lexus RC F (USC10) | Lexus Team Tom's | 1:28.6530 | 1:28.6530 | |
| 10th | 8 | Matsuura / Nojiri | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:28.7690 | 1:28.7690 | |
| 11th | 19 | Sekiguchi / Kunimoto | Lexus RC F (USC10) | Lexus Team WedsSport Bandoh | 1:28.8320 | 1:28.8320 | |
| 12th | 17 | Tsukakoshi / Kogure | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:28.8640 | 1:28.8640 | |
| 13th | 36 | Itou / Cassidy | Lexus RC F (USC10) | Lexus Team Tom's | 1:29.0610 | 1:29.0610 | |
| 14th | 64 | Nakajima / Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:29.2890 | 1:29.2890 | |
| 15th | 6 | Oshima / Caldarelli | Lexus RC F (USC10) | Lexus Team Le Mans Wako's | 1:32.0260 | 1:32.0260 | |
| 17th | 55 | Takagi / Kobayashi | BMW M6 GT3 (F13) | Autobacs Racing Team Aguri | 1:35.7070 | 1:36.0120 | 1:35.7070 |
| 18th | 25 | Tsuchiya / Matsui | Toyota 86 MC (MC86) | Vivac Team Tsuchiya | 1:35.9610 | 1:36.6060 | 1:35.9610 |
| 19th | 31 | Saga / Nakayama | Toyota Prius (ZVW50) | Apr | 1:36.0360 | 1:37.3160 | 1:36.0360 |
| 20th | 7 | Ara / Müller | BMW M6 GT3 (F13) | BMW Team Studie | 1:36.0530 | 1:36.3990 | 1:36.0530 |
| 28th | 88 | Orido / Hiramine | Lamborghini Huracán GT3 | JLOC | 1:36.1900 | 1:36.1900 | 1:36.9940 |
| 21st | 3 | Hoshino / Mardenborough | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:36.1940 | 1:36.9070 | 1:36.1940 |
| 22nd | 21 | Lyons / Fujii | Audi R8 LMS | Audi Team Hitotsuyama | 1:36.2640 | 1:36.9650 | 1:36.2640 |
| 23rd | 18 | Nakayama / Yamada | Toyota 86 MC (86/ZN6) | Team Upgarage With Bandoh | 1:36.4240 | 1:37.2470 | 1:36.4240 |
| 30th | 2 | Takahashi / Katou | Lotus Evora MC (122) | Cars Tokai Dream28 | 1:36.5780 | 1:36.5780 | 1:38.4200 |
| 24th | 61 | Iguchi / Yamauchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:36.6090 | 1:36.9240 | 1:36.6090 |
| 25th | 0 | Couto / Tomita | Nissan GT-R Nismo GT3 (R35) | Gainer | 1:36.6180 | 1:37.1870 | 1:36.6180 |
| 26th | 4 | Taniguchi / Kataoka | Mercedes-AMG GT3 | Goodsmile Racing & Team Ukyo | 1:36.8930 | 1:37.0280 | 1:36.8930 |
| 27th | 51 | Tsuduki / Nitta / Wakisaka | Ferrari 488 GT3 | LM Corsa | 1:36.9540 | 1:36.9690 | 1:36.9540 |
| 29th | 26 | Mitsuyama / Motojima | Audi R8 LMS Ultra | Team Taisan SARD | 1:37.1100 | 1:37.1100 | 1:37.8390 |
| 31st | 5 | Tamanaka / Yamashita / Kageyama | Toyota 86 MC (86/ZN6) | Team Mach | 1:37.4140 | 1:37.4140 | |
| 32nd | 11 | Hiranaka / Wirdheim | Mercedes-AMG GT3 | Gainer | 1:37.4410 | 1:37.4410 | |
| 33rd | 30 | Nagai / Sasaki | Toyota Prius (ZVW50) | Apr | 1:37.5410 | 1:37.5410 | |
| 34th | 65 | Kurosawa / Gamou | Mercedes-AMG GT3 (197) | K2 R&D Leon Racing | 1:37.6710 | 1:37.6710 | |
| 35th | 360 | Shibata / Tanaka / Kiyohara | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:37.6850 | 1:37.6850 | |
| 36th | 48 | Takamori / Tanaka / Aoki | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 1:37.7600 | 1:37.7600 | |
| 37th | 33 | Yamano / Bergmeister | Porsche 991 GT3 R | Excellence Porsche Team KTR | 1:37.9350 | 1:37.9350 | |
| 38th | 108 | Mineo / Cozzolino | Lamborghini Huracán GT3 | Lamboghini Team Direction Shift | 1:38.0320 | 1:38.0320 | |
| 39th | 9 | Sakaguchi / Yoshida / Derdaele | Porsche 991 GT3 R | Gulf Racing With Pacific | 1:38.0460 | 1:38.0460 | |
| 40th | 87 | Hosokawa / Satou / Iida | Lamborghini Huracán GT3 | JLOC | 1:38.0710 | 1:38.0710 | |
| 41st | 50 | Yasuoka / Kubo / Kano | Mercedes-Benz SLS AMG GT3 (197) | Arnage Racing | 1:38.1560 | 1:38.1560 | |
| 42nd | 111 | Ueda / Tsuruta | Mercedes-AMG GT3 | Rn-sports | 1:38.3600 | 1:38.3600 | |
| 43rd | 22 | Wada / Jounai | Mercedes-Benz SLS AMG GT3 | RQ's Motorsports | 1:38.3860 | 1:38.3860 | |
| 44th | 63 | Zaugg / Yokomizo | Lamborghini Huracán GT3 | Lamboghini Team Direction | 1:38.6460 | 1:38.6460 | |
| 45th | 60 | Iida / Yoshimoto | Lexus RC F GT3 (USC10) | LM Corsa | 1:39.1500 | 1:39.1500 | |