| 17 | Montagny / Hélary / Loeb | Pescarolo C60 Hybrid Judd | Pescarolo Sport | 3:30.195 | 3:36.381 | 3:30.195 |
| 7 | Capello / Kristensen / McNish | Audi R10 TDI | Audi Sport Team Joest | 3:32.090 | 3:35.037 | 3:32.090 |
| 16 | Comas / Collard / Bouchut | Pescarolo C60 Hybrid Judd | Pescarolo Sport | 3:32.205 | 3:36.513 | 3:32.205 |
| 8 | Biela / Pirro / Werner | Audi R10 TDI | Audi Sport Team Joest | 3:33.160 | 3:35.927 | 3:33.160 |
| 13 | Nakano / Kurosawa / Gounon | Courage LC70 Mugen | Courage Competition | 3:33.511 | 3:38.207 | 3:33.511 |
| 14 | Lammers / Yoong / Johansson | Dome S101 HB Judd | Racing for Holland | 3:35.209 | 3:44.113 | 3:35.209 |
| 2 | Nielsen / Elgaard / Andersen | Zytek 06S | Zytek Engineering | 3:36.774 | 3:40.223 | 3:36.774 |
| 9 | Minassian / Ortiz / Gabbiani | Creation CA06/H Judd | Creation Autosportif Ltd. | 3:37.556 | 3:37.556 | |
| 19 | Berridge / Evans / Owen | Lola B06/10 AER | Chamberlain - Synergy Motorsport | 3:38.527 | 3:58.615 | 3:38.527 |
| 12 | Hancock / Fisken / Frei | Courage LC70 Mugen | Courage Competition | 3:39.031 | 3:51.711 | 3:39.031 |
| 25 | Newton / Erdos / Wallace | MG Lola EX264 AER | RML | 3:41.873 | 3:43.817 | 3:41.873 |
| 22 | Short / Barbosa / Moseley | Radical SR9 Judd | Rollcentre Racing | 3:43.373 | 3:57.505 | 3:43.373 |
| 33 | Field / Halliday / Dayton | Lola B05/40 AER | Intersport Racing | 3:43.408 | 3:49.697 | 3:43.408 |
| 5 | Primat / Fässler / Peter | Courage LC70 Judd | Swiss Spirit | 3:44.405 | 3:44.405 | |
| 37 | André / Clairay / Bouvet | Courage C65 Ford | Paul Belmondo Racing | 3:48.723 | 3:58.038 | 3:48.723 |
| 39 | Amaral / de Castro / Burgueño | Lola B05/40 AER | Chamberlain - Synergy Motorsport | 3:50.083 | 3:50.083 | |
| 007 | Enge / Turner / Piccini | Aston Martin DBR9 | Aston Martin Racing | 3:51.408 | 3:53.389 | 3:51.408 |
| 32 | Barazi / Vergers / Cunningham | Courage C65 AER | Barazi Epsilon | 3:52.287 | 3:52.287 | |
| 009 | Lamy / Sarrazin / Ortelli | Aston Martin DBR9 | Aston Martin Racing | 3:52.664 | 3:55.822 | 3:52.664 |
| 64 | Gavin / Beretta / Magnussen | Chevrolet Corvette C6.R | Corvette Racing | 3:53.029 | 3:55.743 | 3:53.029 |
| 27 | Macaluso / Lally / James | Courage C65 AER | Miracle Motorsports | 3:53.164 | 4:04.290 | 3:53.164 |
| 63 | Fellows / O'Connell / Papis | Chevrolet Corvette C6.R | Corvette Racing | 3:53.174 | 3:57.230 | 3:53.174 |
| 6 | Moller / Pickering / Kiesa | Lister Storm LMP Hybrid | Lister Storm Racing | 3:54.099 | 4:02.192 | 3:54.099 |
| 72 | Policand / Goueslard / Alphand | Chevrolet Corvette C5-R | Luc Alphand Aventures | 3:54.113 | 3:55.795 | 3:54.113 |
| 20 | Rostan / MacAllister / Pullan | Pilbeam MP93 Judd | Pierre Bruneau | 3:54.414 | 3:59.748 | 3:54.414 |
| 69 | Gollin / Babini / Pescatori | Aston Martin DBR9 | BMS Scuderia Italia | 3:54.507 | 3:58.139 | 3:54.507 |
| 24 | Terada / Timpany / Binnie | Lola B05/40 Zytek | Binnie Motorsports | 3:55.197 | 4:02.942 | 3:55.197 |
| 67 | Pergl / Kox / Vasiliev | Ferrari 550 Maranello | Convers MenX Team | 3:55.316 | 3:57.016 | 3:55.316 |
| 66 | Mowlem / Borcheller / Fittipaldi | Saleen S7-R | ACEMCO Motorsports | 3:56.695 | 4:02.400 | 3:56.695 |
| 36 | Gosselin / Ojjea / Ragues | Courage C65 Ford | Paul Belmondo Racing | 3:57.254 | 3:58.363 | 3:57.254 |
| 50 | Gardel / Bornhauser / Blanchemain | Ferrari 550 Maranello | Larbre Competition | 3:58.563 | 4:04.252 | 3:58.563 |
| 62 | Garcia / Brabham / Piquet, Jr. | Aston Martin DBR9 | Russian Age Racing | 3:58.935 | 3:58.935 | |
| 53 | Apicella / Hinoi / Yamanishi | Lamborghini Murcielago R-GT | JLOC Isao Noritake | 3:59.108 | 4:05.303 | 3:59.108 |
| 35 | Hahn / Morris / Leroch | Courage C65 Judd | G-Force Racing | 3:59.110 | 3:59.110 | |
| 87 | Kirkaldy / Mullen / Niarchos | Ferrari F430 GTC | Scuderia Ecosse | 4:04.252 | 4:09.052 | 4:04.252 |
| 61 | Sugden / Vann / Smith | Ferrari 550 Maranello | Russian Age Racing | 4:04.706 | 4:04.706 | |
| 76 | Narac / Dumas / Riccitelli | Porsche 996 GT3-RSR | IMSA Performance Matmut | 4:04.914 | 4:07.153 | 4:04.914 |
| 80 | Neiman / Long / Van Overbeek | Porsche 996 GT3-RSR | Flying Lizard Motorsports | 4:05.600 | 4:06.130 | 4:05.600 |
| 77 | Maxwell / Jeannette / Milner | Panoz Esperante GT-LM | Multimatic Motorsport - Team Panoz | 4:06.844 | 4:11.025 | 4:06.844 |
| 85 | Bleekemolen / Hezemans / Kane | Spyker C8 Spyder GT2R | Spyker Squadron B.V. | 4:07.328 | 4:12.601 | 4:07.328 |
| 86 | Crevels / Dumbreck / Coronel | Spyker C8 Spyder GT2R | Spyker Squadron B.V. | 4:09.433 | 4:10.002 | 4:09.433 |
| 83 | Nielsen / Farnbacher / Ehret | Porsche 996 GT3-RSR | Seikel Motorsport | 4:09.846 | 4:15.352 | 4:09.846 |
| 89 | Pompidou / Thyrring / Ried | Porsche 996 GT3-RSR | Sebah Automotive Ltd. | 4:10.636 | 4:10.636 | |
| 30 | Roussel / Hauchard / Briche | WR LMP2 Peugeot | Gerard Welter | 4:10.672 | 4:10.672 | |
| 93 | Collin / Nishizawa | Porsche 996 GT3-RS | Team Taisan Advan | 4:10.832 | 4:16.173 | 4:10.832 |
| 73 | Lambert / Lefort / Iannetta | Porsche 996 GT3-RSR | Ice Pol Racing Team | 4:16.088 | 4:25.707 | 4:16.088 |
| 91 | Yamagishi / Konôpka / de Fournoux | Porsche 996 GT3-RS | T2M Motorsport | 4:16.748 | 4:23.658 | 4:16.748 |
| 98 | Bourdais / Cloet / Sharpe | Porsche 996 GT3-RSR | Noel del Bello | 4:26.804 | 4:26.804 | |
| 81 | Tomlinson / Dean / Kimber-Smith | Panoz Esperante GT-LM | Team LNT | 4:33.569 | 4:33.569 | |