| 1st | 7 | Kobayashi / Conway / Sarrazin / *Kunimoto / *Lapierre | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:18.1320 | 247.6000 | 94 |
| 2nd | 8 | Buemi / Nakajima / Davidson / *Lopez / *Kunimoto | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:19.2900 | 246.2000 | 104 |
| 3rd | 9 | Lopez / Lapierre / Kunimoto / *Conway / *Buemi | Toyota TS050 Hybrid | Toyota Gazoo Racing | 3:21.4550 | 243.6000 | 106 |
| 4th | 2 | Bamber / Bernhard / Hartley / Lieb | Porsche 919 Hybrid | Porsche LMP Team | 3:21.5120 | 243.5000 | 75 |
| 5th | 1 | Jani / Lotterer / Tandy / Lieb | Porsche 919 Hybrid | Porsche LMP Team | 3:22.1000 | 242.8000 | 81 |
| 6th | 35 | Negrão / Panciatici / Ragues | Alpine A470 Gibson | Signatech Alpine Matmut | 3:28.1460 | 235.7000 | 71 |
| 7th | 4 | Kraihamer / Bonanomi / Webb | Enso CLM P1/01 Nismo | Bykolles Racing Team | 3:28.7010 | 235.1000 | 68 |
| 8th | 24 | Vergne / Hirschi / Graves | Oreca 07 Gibson | CEFC Manor TRS Racing | 3:28.8440 | 234.9000 | 80 |
| 9th | 37 | Brundle / Gommendy / Cheng | Oreca 07 Gibson | Jackie Chan DC Racing | 3:29.1040 | 234.6000 | 69 |
| 10th | 26 | Lynn / Vanthoor / Rusinov / Thiriet | Oreca 07 Gibson | G-Drive Racing | 3:29.1130 | 234.6000 | 93 |
| 11th | 38 | Tung / Jarvis / Laurent | Oreca 07 Gibson | Jackie Chan DC Racing | 3:29.9240 | 233.7000 | 68 |
| 12th | 13 | Beche / Piquet, Jr. / Heinemeier Hansson | Oreca 07 Gibson | Vaillante Rebellion | 3:30.1500 | 233.5000 | 62 |
| 13th | 28 | Catsburg / Collard / Perrodo / Vaxiviere | Oreca 07 Gibson | TDS Racing | 3:30.3750 | 233.2000 | 81 |
| 14th | 36 | Dumas / Menezes / Rao | Alpine A470 Gibson | Signatech Alpine Matmut | 3:30.5010 | 233.1000 | 81 |
| 15th | 40 | Bradley / Allen / Matelli | Oreca 07 Gibson | Graff | 3:30.5250 | 233.1000 | 63 |
| 16th | 31 | Senna / Canal / Prost | Oreca 07 Gibson | Vaillante Rebellion | 3:30.5350 | 233.0000 | 80 |
| 17th | 25 | Petrov / Trummer / Gonzalez | Oreca 07 Gibson | CEFC Manor TRS Racing | 3:30.5700 | 233.0000 | 81 |
| 18th | 21 | Hanley / Rosenqvist / Hedman | Oreca 07 Gibson | Dragonspeed - 10 Star | 3:30.6930 | 232.9000 | 87 |
| 19th | 22 | Hirakawa / Minassian / Rojas / Gutierrez | Oreca 07 Gibson | G-Drive Racing | 3:31.1500 | 232.4000 | 65 |
| 20th | 32 | Albuquerque / de Sadeleer / Owen | Ligier JS P217 Gibson | United Autosports | 3:31.9070 | 231.5000 | 77 |
| 21st | 47 | Belicchi / Sernagiotto / Lacorte | Dallara P217 Gibson | Cetilar Villorba Corse | 3:32.5670 | 230.8000 | 76 |
| 22nd | 29 | Barrichello / Lammers / van Eerd | Dallara P217 Gibson | Racing Team Nederland | 3:33.3040 | 230.0000 | 86 |
| 23rd | 23 | Berthon / Buret / Barthez / Gachet | Ligier JS P217 Gibson | Panis Barthez Competition | 3:33.6900 | 229.6000 | 64 |
| 24th | 27 | Shaytar / Sirotkin / Mediani | Dallara P217 Gibson | SMP Racing | 3:33.7870 | 229.5000 | 46 |
| 25th | 34 | Chandhok / Moore / Hanson | Ligier JS P217 Gibson | Tockwith Motorsports | 3:34.3850 | 228.9000 | 53 |
| 26th | 39 | Guibbert / Trouillet / Winslow | Oreca 07 Gibson | Graff | 3:34.4040 | 228.8000 | 61 |
| 27th | 17 | Chatin / Lafargue / Zollinger / Lafargue | Ligier JS P217 Gibson | Idec Sport Racing | 3:35.9680 | 227.2000 | 84 |
| 28th | 45 | McMurry / Capillaire / Patterson / Koutsoumidis | Ligier JS P217 Gibson | Algarve Pro Racing | 3:36.5440 | 226.6000 | 96 |
| 29th | 43 | Taylor / Bleekemolen / Keating / de Brujin | Riley Mk.30 Gibson | Keating Motorsports | 3:38.6710 | 224.4000 | 38 |
| 30th | 49 | Calko / Breukers / Konôpka | Ligier JS P217 Gibson | ARC Bratislava | 3:38.9050 | 224.1000 | 66 |
| 31st | 33 | Nicolet / Nicolet / Maris | Ligier JS P217 Gibson | Eurasia Motorsport | 3:43.8170 | 219.2000 | 71 |
| 32nd | 64 | Gavin / Fässler / Milner | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:54.7010 | 209.1000 | 74 |
| 33rd | 91 | Makowiecki / Pilet / Lietz / Vanthoor | Porsche 991 RSR | Porsche GT Team | 3:54.9960 | 208.8000 | 87 |
| 34th | 92 | Estre / Christensen / Werner / *Vanthoor | Porsche 991 RSR | Porsche GT Team | 3:54.9990 | 208.8000 | 72 |
| 35th | 63 | Garcia / Taylor / Magnussen | Chevrolet Corvette C7.R | Corvette Racing - GM | 3:55.0640 | 208.7000 | 87 |
| 36th | 95 | Sørensen / Thiim / Stanaway | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:55.2510 | 208.6000 | 55 |
| 37th | 97 | Adam / Serra / Turner | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:55.2660 | 208.5000 | 55 |
| 38th | 71 | Rigon / Molina / Bird | Ferrari 488 GTE | AF Corse | 3:55.3850 | 208.4000 | 68 |
| 39th | 51 | Calado / di Grassi / Pier Guidi | Ferrari 488 GTE | AF Corse | 3:55.8270 | 208.1000 | 68 |
| 40th | 82 | Kaffer / Fisichella / Vilander | Ferrari 488 GTE | Risi Competizione | 3:55.8470 | 208.0000 | 45 |
| 41st | 69 | Westbrook / Briscoe | Ford GT | Ford Chip Ganassi Team USA | 3:57.5360 | 206.6000 | 57 |
| 42nd | 67 | Tincknell / Derani / Priaulx | Ford GT | Ford Chip Ganassi Team UK | 3:57.8810 | 206.3000 | 84 |
| 43rd | 68 | Hand / Müller | Ford GT | Ford Chip Ganassi Team USA | 3:58.0110 | 206.1000 | 62 |
| 44th | 66 | Johnson / Pla / Mücke | Ford GT | Ford Chip Ganassi Team UK | 3:58.1810 | 206.0000 | 72 |
| 45th | 98 | Lamy / Lauda / Dalla Lana | Aston Martin V8 Vantage GTE | Aston Martin Racing | 3:58.2500 | 205.9000 | 80 |
| 46th | 50 | Rees / Brandela / Philippon | Chevrolet Corvette C7.R | Larbre Competition | 3:58.3020 | 205.9000 | 78 |
| 47th | 77 | Cairoli / Dienst / Ried / Piguet | Porsche 991 RSR | Dempsey - Proton Racing | 3:58.4490 | 205.8000 | 80 |
| 48th | 62 | Bell / Sweedler / MacNeil | Ferrari 488 GTE | Scuderia Corsa | 3:58.5990 | 205.6000 | 74 |
| 49th | 55 | Cioci / Cameron / Scott | Ferrari 488 GTE | Spirit of Race | 3:58.8040 | 205.5000 | 80 |
| 50th | 99 | Gunn / Bryant / Howard | Aston Martin V8 Vantage GTE | Beechdean AMR | 3:58.8850 | 205.4000 | 63 |
| 51st | 90 | Hankey / Yoluc | Aston Martin V8 Vantage GTE | TF Sport | 3:59.1400 | 205.2000 | 50 |
| 52nd | 83 | Bertolini / Jönsson / Krohn | Ferrari 488 GTE | DH Racing | 3:59.1740 | 205.1000 | 65 |
| 53rd | 61 | Sawa / Griffin / Mok | Ferrari 488 GTE | Clearwater Racing | 3:59.2760 | 205.1000 | 88 |
| 54th | 88 | Bachler / Al Qubaisi / Lémeret / *Ried | Porsche 991 RSR | Proton Competition | 3:59.2770 | 205.1000 | 87 |
| 55th | 86 | Barker / Foster / Wainwright | Porsche 991 RSR (2016) | Gulf Racing UK | 3:59.5820 | 204.8000 | 75 |
| 56th | 65 | Balzan / Nielsen / Curtis | Ferrari 488 GTE | Scuderia Corsa | 4:00.1200 | 204.3000 | 62 |
| 57th | 54 | Castellacci / Beretta / Flohr | Ferrari 488 GTE | Spirit of Race | 4:00.2130 | 204.3000 | 84 |
| 58th | 84 | Cocker / Vanthoor / Stevens / Smith | Ferrari 488 GTE | JMW Motorsport | 4:00.5230 | 204.0000 | 66 |
| 59th | 93 | Long / Al Faisal / Hedlund / *Ried / *Bachler | Porsche 991 RSR | Proton Competition | 4:00.5560 | 204.0000 | 53 |
| 60th | 60 | Katou / Wee | Ferrari 488 GTE | Clearwater Racing | 4:05.2480 | 200.1000 | 81 |