(Qualifying Results)
| Pos. | No. | Drivers | Car | Entrant | Q Time | Q1 Time | Q2 Time |
| 1st | 64 | Firman / Matsuda | Honda NSX (LA-NA2) | Mobil1 Nakajima Racing | 1:25.1110 | 1:25.1110 | 1:25.1110 |
| 2nd | 18 | Philippe / Lyons | Honda NSX (LA-NA2) | Dome Mugen Project | 1:25.3820 | 1:25.3820 | 1:25.3820 |
| 3rd | 16 | Schwager / Itou | Honda NSX (LA-NA2) | Dome Mugen Project | 1:25.6010 | 1:25.6010 | 1:25.6010 |
| 4th | 25 | Yamaji / Ara | Toyota Supra (JZA80) | Tsuchiya Engineering | 1:25.6190 | 1:25.6190 | 1:25.6190 |
| 5th | 22 | Motoyama / Krumm | Nissan Skyline GT-R (BNR34) | NISMO | 1:25.7050 | 1:25.7050 | 1:25.7050 |
| 6th | 39 | Dufour / Orido | Toyota Supra (JZA80) | Toyota Team SARD | 1:25.7390 | 1:25.7390 | 1:25.7390 |
| 7th | 76 | Hattori / Tajima | McLaren F1 GTR (19R GTR) | Hitotsuyama Racing | 1:25.8110 | 1:25.8110 | 1:25.8110 |
| 8th | 1 | Takeuchi / Tachikawa | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:25.8400 | 1:26.1940 | 1:25.8400 |
| 9th | 8 | Tsuchiya / Kaneishi | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 1:26.0860 | 1:26.0860 | 1:26.0860 |
| 10th | 36 | Tsuchiya / Gardner | Toyota Supra (JZA80) | Toyota Team Tom's | 1:26.1220 | 1:26.1220 | 1:26.1220 |
| 11th | 100 | Katou / Mitsusada | Honda NSX (LA-NA2) | Team Kunimitsu With Mooncraft | 1:26.1370 | 1:26.1370 | 1:26.1370 |
| 12th | 23 | Comas / Kageyama | Nissan Skyline GT-R (BNR34) | NISMO | 1:26.2110 | 1:26.2110 | 1:26.2110 |
| 13th | 6 | Wakisaka / Iida | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:26.2570 | 1:26.2570 | 1:26.2570 |
| 14th | 37 | Kurosawa / Montin | Toyota Supra (JZA80) | Toyota Team Tom's | 1:26.6060 | 1:26.6060 | 1:26.6060 |
| 15th | 12 | Tanaka / Hoshino | Nissan Skyline GT-R (BNR34) | Team Impul | 1:26.8880 | 1:26.8880 | 1:26.8880 |
| 16th | 30 | Okada / Kurosawa | McLaren F1 GTR (19R GTR) | Team Take One | 1:26.9020 | 1:26.9020 | 1:26.9020 |
| 17th | 35 | Kageyama / Wakisaka | Toyota Supra (JZA80) | KRAFT | 1:27.3030 | 1:28.0330 | 1:27.3030 |
| 18th | 33 | Katayama / Kondou | Toyota Supra (JZA80) | Toyota Team Cerumo | 1:28.5840 | 1:29.6310 | 1:28.5840 |
| 19th | 31 | Nitta / Takagi | Toyota MR-S (ZZW30) | ARTA With A'pex | 1:32.4300 | 1:32.4300 | 1:32.4300 |
| 20th | 24 | Fukuyama / Kinoshita | Porsche 996 GT3-R | Team Taisan Advan | 1:32.8440 | 1:33.7560 | 1:32.8440 |
| 21st | 3 | Yamano / Yanagida | Nissan Silvia (S15) | Hasemi Motorsports | 1:33.2820 | 1:33.3690 | 1:33.2820 |
| 22nd | 71 | Jounai / Sawa | Toyota MR-S (GH-ZZW30) | Sigmatech Racing Team | 1:33.3980 | 1:33.3980 | 1:33.3980 |
| 23rd | 81 | Ohyagi / Aoki | Nissan Silvia (S15) | Team Daishin | 1:33.4360 | 1:35.4050 | 1:33.4360 |
| 24th | 77 | Kobayashi / Tanigawa | Subaru Impreza (E-GC8) | Cusco Racing | 1:33.4600 | 1:33.4600 | 1:33.4600 |
| 25th | 26 | Yogou / Nishizawa | Porsche 996 GT3-RS | Team Taisan Advan | 1:34.0790 | 1:34.0790 | 1:34.0790 |
| 26th | 7 | Matsumoto / Taniguchi | Mazda RX-7 (FD3S) | RE Amemiya Racing | 1:34.0900 | 1:34.0900 | 1:34.0900 |
| 27th | 62 | Shibahara / Mitsuyama | Porsche 996 GT3-R | R&D Sport | 1:34.3620 | 1:34.3620 | 1:34.3620 |
| 28th | 19 | Tanaka / Gotou | Toyota MR-S (ZZW30) | Racing Project Bandoh | 1:34.3680 | 1:34.3680 | 1:34.3680 |
| 29th | 86 | Nagashima / Matsuda | Toyota MR-S (ZZW30) | KRAFT | 1:34.4340 | 1:34.9840 | 1:34.4340 |
| 30th | 55 | Yamada / Shimizu | Chrysler Viper GTS-R | Team Taisan Jr. | 1:34.6250 | 1:34.6250 | 1:34.6250 |
| 31st | 360 | Nishizawa / Sasaki | Ferrari 360 Modena (GF-F360) | Dentaire Projet Racing | 1:34.7370 | 1:34.7370 | 1:34.7370 |
| 32nd | 17 | Matsunaga / Namekawa | Toyota MR-S (ZZW30) | Tom's Spirit | 1:34.7590 | 1:34.7590 | 1:34.7590 |
| 33rd | 910 | Matsuda / Wilcox | Porsche 996 GT3-RS | 910 Racing | 1:34.7930 | 1:42.2110 | 1:42.2110 |
| 34th | 15 | Hashimoto / Kwan | BMW M3 GTR (E46) | Amprex Motorsport | 1:34.8250 | 1:34.8250 | 1:34.8250 |
| 35th | 21 | Hitotsuyama / Kikuchi | BMW M3 GT (E46) | Hitotsuyama Racing | 1:35.0250 | 1:35.0250 | 1:35.0250 |
| 36th | 2 | Takahashi / Watanabe | Honda NSX (GH-NA2) | Verno Tokai Dream 28 | 1:35.3000 | 1:35.3000 | 1:35.3000 |
| 43rd | 9 | Hioki / Shimojima | Porsche 996 GT3-R | Team Daikokuya | 1:35.7490 | 1:35.7490 | 1:35.7490 |
| 37th | 911 | Hirakawa / Hashimura | Porsche 996 GT3-RS | 910 Racing | 1:35.9040 | 1:36.4830 | 1:36.4830 |
| 38th | 61 | Suga / Miyagawa | Porsche 996 GT3-RS | R&D Sport Ex | 1:36.0820 | 1:36.0820 | 1:36.0820 |
| 39th | 63 | "Osamu" / Nakagawa | Porsche 996 GT3-RS | R&D Sport | 1:36.1190 | 1:36.1190 | 1:36.1190 |
| 40th | 28 | Hane / Yamagishi | Porsche 996 GT3-RS | Team Taisan Jr. | 1:36.2730 | 1:36.2730 | 1:36.2730 |
| 41st | 70 | Ishibashi / van Schoote | Porsche 996 GT3-RS | Team Gaikokuya | 1:37.0770 | 1:38.2660 | 1:37.0770 |
| 42nd | 5 | Tamanaka / Hinoi | Mosler MT900R | A&S Racing | 1:37.4390 | 1:37.7110 | 1:37.4390 |
| 44th | 88 | Apicella / Wada | Lamborghini Diablo JGT-1 (ZA90DE068) | JLOC | no time | | |
Entered cars that did not arrive:
| No. | Drivers | Car | Entrant |
| 62 | Mitsuyama / Shibahara | Vemac RD320R | R&D Sport |
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