(Qualifying Results)
| Pos. | No. | Drivers | Car | Entrant | Q Time |
| 1st | 25 | Geoff Lees | MCS 9 Mugen (Reynard 89DGC) | Kawai Steel Racing Team Le Mans | 1:14.2500 |
| 2nd | 16 | Masanori Sekiya | March 89GC Mugen | Leyton House Racing Team | 1:14.4100 |
| 3rd | 24 | Emanuele Pirro | MCS 9 Mugen (Reynard 89DGC) | Kawai Steel Racing Team Le Mans | 1:14.6300 |
| 4th | 17 | Tetsuya Oota | MCS 8 Mugen (Lola T87/50) | Checker Motors & Noji | 1:15.0200 |
| 5th | 8 | Keiji Matsumoto | MCS 8 Mugen (Lola T87/50) | Meiju Racing Team | 1:15.0500 |
| 6th | 19 | Kazuyoshi Hoshino | MCS 8 Mugen (Lola T88/50) | Cabin Racing Team With Impul | 1:15.2900 |
| 7th | 26 | Takao Wada | Mad House F4 Mugen (Lola T88/50) | Advan Sport Pal | 1:15.4300 |
| 8th | 15 | Hideki Okada | March 89GC Mugen | Leyton House Racing Team | 1:15.8400 |
| 9th | 7 | Kunimitsu Takahashi | Cerumo 89G Mugen (Lola T88/50) | Advan Sports Nova | 1:15.9400 |
| 10th | 6 | Eje Elgh | R&D 88Q Mazda (Lola T88/40) | Sundai Spilit Team | 1:16.8900 |
| 11th | 60 | Takashi Yorino | Cerumo 89G Mazda (Lola T88/50) | Itoham Racing Team | 1:18.2000 |
| 12th | 3 | Taku Akaike | MCS 7 Mazda (March 86B) | Team Taku | 1:18.3200 |
| 13th | 28 | Kazuo Mogi | MCS 7 Ford (March 86B) | Fet With Zoom Racing | 1:18.6900 |
| 14th | 2 | Yojiro Terada | R&D 88Q Mazda (March 88GC) | Artnature Racing Team | 1:20.3200 |
Entered cars that did not arrive:
| No. | Drivers | Car | Entrant |
| 33 | Masatomo Shimizu | Mad House Ford (Lola T86/50) | Shimizu Racing |
| 46 | Fumio Mutou | MCS 7 Ford (March 86B) | TTS Racing |
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