| 1st | 61 | Katou / Ara | Audi R8 | Audi Sport Japan Team Goh | 1:52.8560 | 1:52.8560 | 1:57.6030 |
| 2nd | 6 | Wakisaka / Iida / Wakisaka | Toyota Supra (JZA80) | Esso Toyota Team Le Mans | 1:58.0030 | 1:58.0030 | 1:58.0450 |
| 3rd | 18 | Philippe / Kaneishi / Lyons | Honda NSX (GH-NA2) | Dome Mugen Project | 1:58.4360 | 1:58.9330 | 1:58.4360 |
| 4th | 16 | Michigami / Itou / Mitsusada | Honda NSX (GH-NA2) | Dome Mugen Project | 1:59.0080 | 1:59.0310 | 1:59.0080 |
| 5th | 23 | Kageyama / Krumm / Tanaka | Nissan Skyline GT-R (BNR34) | NISMO | 1:59.5710 | 1:59.5710 | 2:00.5480 |
| 6th | 39 | Dufour / Orido / Taniguchi | Toyota Supra (JZA80) | Toyota Team SARD | 2:00.2250 | 2:00.2250 | 2:02.6140 |
| 7th | 88 | Wada / Apicella | Lamborghini Diablo (DE21) | JLOC | 2:05.6910 | 2:05.6910 | 2:06.5270 |
| 8th | 62 | Shibahara / Mitsuyama | Vemac RD320R | R&D Sport | 2:08.1900 | 2:08.4880 | 2:08.1900 |
| 9th | 3 | Sakaguchi / Furuya / Kouuchi | Oscar SK5.2 Toyota | Max Racing | 2:08.2280 | 2:08.2280 | 2:08.2300 |
| 10th | 52 | Nishimura / Tomimoto / Furuya | Oscar SK5.2 Toyota | Nishimura Hidetoshi | 2:09.8140 | 2:09.8140 | 2:14.3450 |
| 11th | 22 | Yamamoto / Yamamoto / Chikada | Oscar SK5.2 Toyota | Nagai Iin Motor Sport Club | 2:09.8540 | 2:09.8540 | 2:13.1660 |
| 12th | 5 | Tamanaka / Hinoi | Mosler MT900R | A&S Racing | 2:09.9000 | 2:09.9000 | 2:10.7980 |
| 13th | 71 | Jounai / Sawa / Tajima | Toyota MR-S (GH-ZZW30) | Sigmatech Racing Team | 2:10.6490 | 2:10.6490 | 2:12.7590 |
| 14th | 55 | Kimoto / Dumas / Pompidou | Porsche 996 GT3-RS | Kimoto Racing Team | 2:11.4840 | 2:11.4840 | 2:13.6190 |
| 15th | 930 | Yamada / Miyagawa / Ochiai | Porsche 930 | M's Machine Works | 2:12.1160 | 2:12.1160 | 2:17.3940 |
| 16th | 15 | Hashimoto / Kwan | BMW M3 GT (E46) | Amprex Motorsport | 2:12.4210 | 2:12.4210 | 2:13.5620 |
| 17th | 2 | Takahashi / Watanabe / Suga | Honda NSX (GH-NA2) | Verno Tokai Dream 28 | 2:12.4570 | 2:12.4570 | 2:12.9810 |
| 18th | 9 | Takenaka / Tsutsumi / Hioki | Porsche 996 GT3-R | Team Daikokuya | 2:12.4650 | 2:13.6410 | 2:12.4650 |
| 19th | 911 | Hirakawa / Koyama / Wilcox | Porsche 996 GT3-RS | 910 Racing | 2:13.6070 | 2:13.6070 | 2:15.0880 |
| 20th | 8 | Kaku / Mikami / Toujou | Oscar SK5.2 Toyota | Repri Sport | 2:15.0760 | 2:15.8090 | 2:15.0760 |
| 21st | 70 | Ishibashi / van Schoote / Orcutt | Porsche 996 GT3-RS | Team Gaikokuya | 2:16.8800 | 2:16.8800 | no time |
| 22nd | 19 | Koshimizu / Ueda / Aoki | Nissan Skyline GT-R (BNR34) | JMC Racing Division | 2:17.7060 | 2:18.4520 | 2:17.7060 |
| 23rd | 34 | Sunako / Tsubobayashi / Itaka | Nissan Skyline GT-R (BNR34) | Susuki Racing Machanics | 2:18.2100 | 2:18.2100 | 2:18.9150 |
| 24th | 912 | Haga / Iijima / Wada | Porsche GT3 Cup | 910 Racing | 2:18.8690 | 2:18.8690 | 2:27.6990 |
| 25th | 1 | Kasuya / Iketani / Yoshikawa | Nissan Skyline GT-R | Oreka Technic Ideal | 2:19.4460 | 2:19.4460 | 2:19.7360 |
| 26th | 36 | Tanaka / Sodeyama / Inoue | Porsche 911 RSR | | 2:21.2370 | 2:21.2370 | no time |
| 27th | 20 | Komiya / Kobayashi / Itou | Mitsubishi Lancer (CT9A) | RS Ogawa | 2:21.7780 | 2:21.7780 | 2:23.0330 |
| 28th | 11 | Tomimasu / Seki / Kouketsu | Mitsubishi Lancer (CT9A) | Shinryou Racing Team | 2:24.1030 | 2:24.1030 | 2:25.6630 |
| 29th | 14 | Satou / Tanaka / Kanamori | West 936S Toyota | Team Jikanwari | 2:24.8130 | 2:27.9960 | 2:24.8130 |
| 30th | 33 | Miyoshi / Muramatsu / Sekine | Mazda RX-7 (FD3S) | I-dea Project | 2:25.0080 | 2:26.0280 | 2:25.0080 |
| 31st | 7 | Katagiri / Hashizawa / Hara | Lotus Elise | Wing Auto | 2:25.2330 | 2:25.2330 | 2:32.2040 |
| 32nd | 280 | Ooshiro / Murakami / Sakai | Honda NSX | GT-ROM Net Nsx Owners Club | 2:25.8620 | 2:25.8620 | 2:31.1450 |
| 33rd | 45 | Asano / Kasahara | Honda Integra Type R (DC5) | Asano Racing Service | 2:28.2500 | 2:28.2500 | no time |
| 34th | 73 | Takara / Yamazaki / Yamamoto | Honda Integra Type R (DC5) | Team A-One | 2:29.1690 | 2:29.1690 | 2:30.4400 |
| 35th | 602 | Okada / Iwatsuki / Torii | Mitsubishi Lancer (CT9A) | Team Jikanwari | 2:31.8130 | 2:31.8130 | 2:36.6220 |