| 1st | 8 | Firman / Itou | Honda NSX (LA-NA2) | Team Honda Racing | 1:55.7130 |
| 2nd | 18 | Michigami / Kogure / Kaneishi | Honda NSX (LA-NA2) | Team Honda Racing | 1:56.4480 |
| 3rd | 39 | Couto / Quintarelli / *Shimoda | Toyota Supra (JZA80) | Toyota Team SARD | 1:58.0560 |
| 4th | 88 | Yamanishi / Furuya / Hinoi | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:03.8960 |
| 5th | 2 | Takahashi / Watanabe / Katou | Vemac RD320R | Verno Tokai Dream28 | 2:05.7520 |
| 6th | 15 | Sakaguchi / Wakasone / Gohei | Oscar SK5.2 Toyota | Max Racing | 2:06.9470 |
| 7th | 5 | Kimoto / Tamanaka / Takei | Vemac RD320R | Kimoto Racing | 2:08.5350 |
| 8th | 66 | Shimazawa / Itou / Oota | Oscar SK93 | Jidousya Koubou Myst | 2:08.5480 |
| 9th | 9 | Yamashita / Yamada / Tanigawa | Mosler MT900R | A&S Racing | 2:10.3200 |
| 10th | 112 | Yogou / Jounai / Seki | Porsche 996 GT3 (GF99663) | Arktech Motorsports | 2:10.6800 |
| 11th | 70 | Ishibashi / Koizumi / Yamaji | Porsche 996 GT3-RS | Team Gaikokuya | 2:11.0460 |
| 12th | 22 | Miyagi / Yamamoto / Chikada | Oscar SK5.2 | Nagai Iin Motorsport YRP | 2:11.3930 |
| 13th | 32 | Ihashi / Shimizu / Yoshida | Porsche 993 RSR | Promodet Komine Enigineering | 2:12.8770 |
| 14th | 84 | Iida / Hashiguchi / Kimura | Porsche 996 GT3 | M's Machine Works | 2:14.9990 |
| 15th | 52 | Furuya / Furuya / Waki | Oscar SK5.2 | Team F2&W Dental | 2:15.4500 |
| 16th | 28 | Matsuda / Miyagawa / Ichiraku | Porsche 996 GT3 | Team Seico Carrera Racing | 2:15.9500 |
| 17th | 111 | Saitou / Wada / Haga | Porsche 968 (E-968) | Arktech Motorsports | 2:17.7020 |
| 18th | 14 | Koyama / Watanabe / Takamizawa | Porsche 996 GT3 | Toumei Sports | 2:17.7470 |
| 19th | 79 | Umino / Yoshida / Hanaoka | Oscar SK90 | Nakanihon Jidousya Tandai Racing | 2:18.0100 |
| 20th | 6 | Tomimasu / Seki | Mitsubishi Lancer (CT9A) | Shinryou Racing Team | 2:18.6430 |
| 21st | 27 | Aoyama / Takagi / Tsuduki | Porsche 964 RSR | Team Kawamura | 2:19.1330 |
| 22nd | 56 | Matsumoto / Itou / Noda | Mitsubishi Lancer (CT9A) | Ralliart Pit Kyouto Dunlop | 2:21.3790 |
| 23rd | 109 | Hioki / Matsumoto / Yoshikawa | Porsche 996 GT3 | Arktech Motorsports | 2:24.3650 |
| 24th | 29 | Ueda / Umekawa / *Shibuya | Honda NSX (NA-2) | Person's Racing Tracy Sports Fab | 2:24.7320 |
| 25th | 30 | Namekata / Nagano / Kuragon | Honda S2000 (AP-1) | Person's Racing Tracy Sports Fab | 2:24.9410 |
| 26th | 87 | Kanamori / Takeshima / Satou | Honda Integra (DC5) | K'z Racing Factory | 2:25.2920 |
| 27th | 73 | Maejima / Yamashita / Ookawara | Honda Integra (DC5) | Team A-One | 2:26.5960 |
| 28th | 7 | Kumita / Ogiwara | Mazda RX-7 (FD3S) | Promodet | 2:26.9930 |
| 29th | 45 | Asano / Kasahara / Mizugaki | Honda Integra (DC5) | Asano Racing Service | 2:27.0110 |
| 31st | 08 | Yamazaki / Murase / Itakura | Mazda RX-8 (SE3P) | Team NRF | 2:27.0460 |
| 4 | Sakurai / Kawai / Sodeyama | Mitsubishi Lancer (CT9A) | Team Delta | 2:27.7270 |
| 30th | 602 | Iwatsuki / Torii / Okada | Mitsubishi Lancer (CP9A) | Palm Town | 2:28.9350 |
| 32nd | 0 | Kouno / Kitano / Kuroda | Honda Integra (DC5) | Kimoto Racing | 2:30.2170 |
| 33rd | 913 | Fukuyama / Suhou / Inoue | Chevrolet Corvette C6 (GH-X245) | A&S Racing | 2:53.8250 |
| 34th | 12 | Shimada / Akaboshi / Yoshimoto | Mitsubishi Lancer (CT9A) | Team Jikanwari Plus One | 4:57.3290 |
| 35th | 1 | Kasuya / Hoshino | Alfa Romeo 147 (ZAR937) | Orque Technique Ideale | 5:09.2660 |