(Qualifying Results)
| Pos. | No. | Drivers | Car | Entrant | Q Time |
| 4th | 18 | Michigami / Kogure / Kaneishi | Honda NSX (LA-NA2) | Team Honda Racing | 1:56.9500 |
| 1st | 12 | Tréluyer / Hoshino / Dufour | Nissan Fairlady Z (Z33) | Team Impul | 1:57.0060 |
| 3rd | 8 | Ito / Firman / Kaneishi | Honda NSX (LA-NA2) | Team Honda Racing | 1:57.0440 |
| 2nd | 25 | Orido / Tsuchiya / Noda | Toyota Supra (JZA80) | Toyota Team Tsuchiya | 1:57.2190 |
| 15th | 32 | Duval / Mutou | Honda NSX (LA-NA2) | Epson Nakajima Racing | 1:57.8380 |
| 10th | 22 | Krumm / Carbone / Lyons | Nissan Fairlady Z (Z33) | Nismo | 1:57.9410 |
| 5th | 6 | Iida / Kataoka / Wirdheim | Lexus SC430 (UZZ40) | Mobil1 Toyota Team Le Mans | 1:57.9530 |
| 9th | 100 | Philippe / Hosokawa | Honda NSX (LA-NA2) | Team Kunimitsu | 1:58.0430 |
| 8th | 3 | Yokomizo / de Oliveira / Manning | Nissan Fairlady Z (Z33) | Hasemi Motorsport | 1:58.0550 |
| 6th | 24 | Comas / Yanagida / Ara | Nissan Fairlady Z (Z33) | Kondo Racing | 1:58.1580 |
| 7th | 23 | Motoyama / Matsuda / Ide | Nissan Fairlady Z (Z33) | Nismo | 1:58.2310 |
| 11th | 66 | Couto / Hiranaka / Ayari | Toyota Supra (JZA80) | Toyota Team Sard | 1:58.2830 |
| 12th | 1 | Tachikawa / Takagi / Quintarelli | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 1:58.4420 |
| 13th | 36 | Wakisaka / Lotterer / Sutil | Lexus SC430 (UZZ40) | Toyota Team Tom's | 1:58.6500 |
| 14th | 35 | Hattori / Dumbreck / Tajima | Lexus SC430 (UZZ40) | Toyota Team Kraft | 1:58.7720 |
| 19th | 13 | Kageyama / Fujii | Nissan Fairlady Z (Z33) | Endless Sports | 2:08.3840 |
| 20th | 5 | Tamanaka / Tsutsui / Watanabe | Vemac RD320R | Team Mach | 2:08.4170 |
| 18th | 19 | Matsuda / Wakisaka | Toyota Celica (ZZT231) | Racing Project Bandoh | 2:08.5110 |
| 21st | 47 | Nagashima / Yasuda | Nissan Fairlady Z (Z33) | Mola | 2:08.5970 |
| 17th | 52 | Takeuchi / Saga / Sawa | Toyota Celica (ZZT231) | Toyota Team Cerumo | 2:08.7430 |
| 25th | 101 | Nitta / Takagi | Toyota MR-S (GH-ZZW30) | Apr | 2:08.7650 |
| 22nd | 62 | Shibahara / Kurosawa | Vemac RD408R | Willcom R&D Sport | 2:08.8990 |
| 26th | 27 | Mitsuyama / Taniguchi | Vemac RD320R | Direxiv Motorsports | 2:09.0230 |
| 23rd | 7 | Yamano / Iiri / Yamaji | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:09.2430 |
| 24th | 46 | Sasaki / Bamba | Nissan Fairlady Z (Z33) | Mola | 2:09.3200 |
| 27th | 2 | Takahashi / Kato / Yoshimoto | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:09.5540 |
| 28th | 88 | Apicella / Hinoi / Furuya | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:09.6610 |
| 29th | 11 | Tanaka / Aoki | Ferrari 360 Modena (GF-F360) | Jim Gainer | 2:09.7710 |
| 30th | 14 | Kinoshita / Mineo / Sunako | Porsche 996 GT3-RS | Endless Sports | 2:09.7720 |
| 31st | 55 | Mitsusada / Ikeda / Ishiura | Ford GT (DHG-replica) | Dhg Racing | 2:10.0790 |
| 32nd | 10 | Kozono / Omoto / Yamada | Ferrari 360 Modena (GF-F360) | Jim Gainer | 2:10.1010 |
| 33rd | 87 | Yamanishi / Wada / Yogo | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:10.1080 |
| 34th | 910 | Uematsu / Kikuchi / Sakaguchi | Porsche 996 GT3-RSR | 910 Racing With Team Ishimatsu | 2:10.4380 |
| 35th | 110 | Matsuda / Suga / Tsubobayashi | Porsche 986 Boxster | Arktech Motorsports | 2:10.5300 |
| 36th | 9 | Nakajima / Tanaka / Yoshimoto | Mosler MT900R | A&S Racing | 2:10.7620 |
| 37th | 96 | Kurosawa / Kurosawa | Vemac RD350R | Ebbro Team Nova | 2:11.1150 |
| 40th | 777 | Tanaka / Oshima / Kobayashi | Toyota MR-S (GH-ZZW30) | Ryouzanpaku With Apr | 2:11.4310 |
| 38th | 70 | Ishibashi / Ihashi / Yamagishi | Porsche 996 GT3-RS | Team Gaikokuya | 2:12.1110 |
| 39th | 111 | Iijima / Jounai / Namekawa | Porsche 996 GT3 Cup | Team LeyJun | 2:15.6480 |
Entered cars that did not arrive:
| No. | Drivers | Car | Entrant |
| 77 | Kobayashi / Tanigawa | Subaru Impreza (GD) | Cusco Racing |
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