| 1st | 100 | Ide / Hosokawa / Matsuura | Honda NSX (LA-NA2) | Team Kunimitsu | 2:07.4740 |
| 2nd | 22 | Krumm / Schwager / Yanagida | Nissan GT-R | Nismo | 2:07.7530 |
| 3rd | 17 | Kaneishi / Kaneishi / Tsukakoshi | Honda NSX (LA-NA2) | Real Racing With Leon | 2:08.4210 |
| 4th | 1 | Firman / Izawa | Honda NSX (LA-NA2) | Autobacs Racing Team Aguri | 2:08.4570 |
| 5th | 12 | Matsuda / Philippe | Nissan GT-R | Team Impul | 2:08.7060 |
| 6th | 36 | van Dam / Lotterer / Wakisaka | Lexus SC430 (UZZ40) | Petronas Toyota Team Tom's | 2:08.7550 |
| 7th | 35 | Kataoka / Dumbreck | Lexus SC430 (UZZ40) | Toyota Team Kraft | 2:08.9170 |
| 8th | 23 | Tréluyer / Motoyama / Carbone | Nissan GT-R | Nismo | 2:08.9840 |
| 9th | 6 | Iida / Streit / Wirdheim | Lexus SC430 (UZZ40) | Eneos Toyota Team Le Mans | 2:09.0460 |
| 10th | 18 | Michigami / Kogure | Honda NSX (LA-NA2) | Dome Racing Team | 2:09.1120 |
| 11th | 38 | Tachikawa / Lyons | Lexus SC430 (UZZ40) | Toyota Team Cerumo | 2:09.1440 |
| 12th | 32 | Duval / Hiranaka | Honda NSX (LA-NA2) | Nakajima Racing | 2:10.2410 |
| 13th | 39 | Couto / Takagi / Saga | Lexus SC430 (UZZ40) | Toyota Team Sard | 2:10.3590 |
| 14th | 24 | de Oliveira / Ara | Nissan GT-R | Kondo Racing | 2:11.5140 |
| 15th | 25 | Tsuchiya / Ishiura | Lexus SC430 (UZZ40) | Toyota Team Tsuchiya | 2:11.9610 |
| 16th | 3 | Quintarelli / Yokomizo | Nissan GT-R | Hasemi Motorsport | 2:12.0580 |
| 17th | 77 | Sasaki / Yamano | Subaru Impreza (GD) | Cusco Racing | 2:22.4320 |
| 18th | 43 | Takagi / Nitta / Mineo | ASL Garaiya (GT300VQ) | Autobacs Racing Team Aguri | 2:23.2710 |
| 19th | 95 | Oshima / Kunimoto / Sakamoto | Toyota MR-S (GH-ZZW30) | Apr | 2:23.5830 |
| 20th | 2 | Katou / Takahashi / Yoshimoto | Shiden MC/RT-16 | Cars Tokai Dream28 | 2:23.9190 |
| 21st | 46 | Hoshino / Yasuda | Nissan Fairlady Z (Z33) | Mola | 2:24.0640 |
| 22nd | 19 | Orido / Abe / Sekiguchi | Lexus IS350 (GSE21) | Racing Project Bandoh | 2:24.4180 |
| 23rd | 81 | Fujii / Aoki | Nissan Fairlady Z (Z33) | Team Daishin | 2:24.9200 |
| 24th | 66 | Yamanishi / Yogou | Lamborghini Murcielago RG-1 (GH-BC10E) | JLOC | 2:25.1580 |
| 25th | 11 | Tanaka / Ueda | Ferrari F430 (GF-F360) | Jim Gainer | 2:25.5750 |
| 26th | 33 | Kinoshita / Kageyama | Porsche 997 GT3 RSR | Hankook KTR | 2:25.8200 |
| 27th | 4 | Sakaguchi / Matsushita / Uematsu | Vemac RD320R | Team Uematsu Nova | 2:25.9890 |
| 28th | 26 | Taniguchi / Yamaji / Sawa | Porsche 996 GT3-RS | Team Taisan With Nishizawa | 2:26.1660 |
| 29th | 7 | Iiri / Orime / Matsumura | Mazda RX-7 (FD3S) | RE Amemiya Racing | 2:26.3970 |
| 30th | 88 | Matsuda / Furuya / Sakamoto | Lamborghini Gallardo RG-3 | JLOC | 2:27.1070 |
| 31st | 52 | Kurosawa / Iguchi / Yamauchi | Lexus IS350 (GSE21) | Team Takeuchi With Shift | 2:27.6520 |
| 32nd | 62 | Kurosawa / Shibahara / Mitsuyama | Vemac RD408R | Willcom R&D Sport | 2:28.2090 |
| 33rd | 87 | Wada / Kurihara / Namekata | Lamborghini Gallardo RG-3 | JLOC | 2:28.2190 |
| 34th | 118 | Jounai / Miyamoto / Kurihara | Porsche 996 GT3-RS | Tomei Sports | 2:28.6990 |
| 35th | 5 | Tamanaka / Yamano / Tsutsui | Vemac RD320R | Team Mach | 2:29.6060 |
| 36th | 111 | Kurosawa / Koizumi | Porsche 986 Boxster | Arktech Motorsports | 2:30.1950 |
| 37th | 666 | Suhou / Yamashita / "Takamori.com" | Vemac RD320R | Avanzza Rosso | 2:30.8960 |
| 38th | 170 | Yamagishi / Ishibashi / Takamizawa | Porsche 996 GT3-RS | Team Gaikokuya | 2:31.4400 |
| 39th | 9 | Tanigawa / Takei / Matsumoto | Chevrolet Corvette C6 (GH-X245) | A&S Racing | 2:40.2810 |
| 40th | 110 | Mitsusada / Ikeda | Porsche 986 Boxster | Arktech Motorsports | 2:42.3170 |
| 41st | 27 | Inoue / Jin-Woo / Takasaki | Porsche 996 GT3-RSR | Team Shadow | no time |
| 42nd | 808 | Kikuchi / Tagahara | BMW Z4 M Coupe (S62) | Studie & Glad With Asada Racing | no time |