| 46 | Satoshi Motoyama / Masataka Yanagida | Nissan GT-R (R35) | Mola | 1:34.9990 |
| 23 | Tsugio Matsuda / Ronnie Quintarelli | Nissan GT-R (R35) | NISMO | 1:35.2100 |
| 37 | Daisuke Itou / Andrea Caldarelli | Lexus RC F | Lexus Team KeePer Tom's | 1:35.7260 |
| 24 | Michael Krumm / Daiki Sasaki | Nissan GT-R (R35) | Kondo Racing | 1:36.0890 |
| 100 | Takashi Kogure / Hideki Mutou | Honda NSX Concept-GT (NSX-P) | Team Kunimitsu | 1:36.1470 |
| 17 | Koudai Tsukakoshi / Toshihiro Kaneishi | Honda NSX Concept-GT (NSX-P) | Keihin Real Racing | 1:36.2690 |
| 1 | Yuuji Tachikawa / Kouhei Hirate | Lexus RC F | Lexus Team Zent Cerumo | 1:36.2710 |
| 12 | Hironobu Yasuda / Joao Paolo de Oliveira | Nissan GT-R (R35) | Team Impul | 1:36.4080 |
| 8 | Vitantonio Liuzzi / Kousuke Matsuura | Honda NSX Concept-GT (NSX-P) | Autobacs Racing Team Aguri | 1:36.6310 |
| 18 | Naoki Yamamoto / Jean-Karl Vernay | Honda NSX Concept-GT (NSX-P) | weider Modulo Dome Racing | 1:36.9420 |
| 36 | James Rossiter / Ryo Hirakawa | Lexus RC F | Lexus Team Petronas Tom's | 1:36.9610 |
| 39 | Hiroaki Ishiura / Oliver Jarvis | Lexus RC F | Lexus Team Sard | 1:37.4240 |
| 32 | Daisuke Nakajima / Bertrand Baguette | Honda NSX Concept-GT (NSX-P) | Nakajima Racing | 1:37.6170 |
| 19 | Juichi Wakisaka / Yuuhi Sekiguchi | Lexus RC F | Lexus Team WedsSport Bandoh | 1:41.4010 |
| 61 | Kota Sasaki / Takuto Iguchi | Subaru BRZ GT300 (DBA-ZC6) | R&D Sport | 1:45.7170 |
| 3 | Kazuki Hoshino / Lucas Ordoñez | Nissan GT-R Nismo GT3 (R35) | NDDP Racing | 1:45.8360 |
| 55 | Shinichi Takagi / Takashi Kobayashi | Honda CR-Z (ZF2) | Autobacs Racing Team Aguri | 1:45.9690 |
| 60 | Akira Iida / Hiroki Yoshimoto | BMW Z4 GT3 (E89) | LM Corsa | 1:46.1580 |
| 0 | Yuuki Nakayama / Tomoki Nojiri | Honda CR-Z (ZF2) | Team Mugen | 1:46.4050 |
| 88 | Manabu Orido / Takayuki Aoki | Lamborghini Gallardo GT3 (22-12226) | JLOC | 1:46.5410 |
| 10 | Masayuki Ueda / Hideki Yamauchi | Mercedes-Benz SLS AMG GT3 | Gainer | 1:46.7670 |
| 31 | Morio Nitta / Kouki Saga | Toyota Prius (ZVW30) | Apr | 1:46.8340 |
| 11 | Katsuyuki Hiranaka / Björn Wirdheim | Mercedes-Benz SLS AMG GT3 | Gainer | 1:46.9120 |
| 30 | Yuuki Iwasaki / Masami Kageyama | Nissan GT-R Nismo GT3 (R35) | Apr | 1:46.9170 |
| 86 | Shin'ya Hosokawa / Kouji Yamanishi | Lamborghini Gallardo GT3 (09-7) | JLOC | 1:47.0290 |
| 9 | Takuya Shirasaka / André Couto | Porsche 997 GT3 R | Pacific Direction Racing | 1:47.2280 |
| 21 | Richard Lyons / Tomonobu Fujii | Audi R8 LMS Ultra | Audi Team Hitotsuyama | 1:47.3050 |
| 65 | Haruki Kurosawa / Tsubasa Kurosawa | Mercedes-Benz SLS AMG GT3 | Leon Racing | 1:47.5550 |
| 4 | Nobuteru Taniguchi / Tatsuya Kataoka | BMW Z4 GT3 (E89) | GSR & Studie With Team Ukyo | 1:47.5820 |
| 67 | Naoki Yokomizo / Shogo Mitsuyama | Nissan GT-R Nismo GT3 (R35) | Team Taisan | 1:47.7930 |
| 22 | Hisashi Wada / Takeshi Tsuchiya | Mercedes-Benz SLS AMG GT3 | R'Qs Motorsports | 1:47.7940 |
| 50 | Masaki Kano / Hideto Yasuoka | Aston Martin V12 Vantage GT3 | Arnage Racing | 1:47.8730 |
| 33 | Akihiro Tsuduki / Kyousuke Mineo | Porsche 997 GT3 R | Porsche Team KTR | 1:48.0840 |
| 360 | Atsushi Tanaka / Ryuuju Fujita | Nissan GT-R Nismo GT3 (R35) | Tomei Sports | 1:48.1910 |
| 5 | Tetsuji Tamanaka / Naoya Yamano | Nissan GT-R Nismo GT3 (R35) | Team Mach | 1:48.4880 |
| 48 | Hiroshi Takamori / Masaki Tanaka | Nissan GT-R Nismo GT3 (R35) | Dijon Racing | 1:50.3190 |